| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 536,283 | A→G | 13.9% | noncoding (178/190 nt) | PP_mr06 ← | P27 ncRNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 536,283 | 0 | A | G | 13.9% | 82.2 / 6.1 | 36 | noncoding (178/190 nt) | PP_mr06 | P27 ncRNA |
| Reads supporting (aligned to +/- strand): ref base A (18/13); new base G (2/3); total (20/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.38e-01 | |||||||||||
TGAAGCCCTGATCGCTGACCTGAAGCGTATCAAGCCAGCTTCCTCGAAAGGTATCTACGTTAAGCGCGTTACCCTGAGCACCACCATGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCAGCCCACGCAGATGGTGCTCCCGATTCGTTACCGAATC > NC_002947/536135‑536401 | tGAAGCCCTGATCGCTGACCTGAAGCGTATCAAGCCAGCTTCCTCGAAAGGTATCTACGTTAAGCGCGTTACCCTGAGCACCACCATGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAg > 1:1170080/1‑150 (MQ=255) cTGATCGCTGACCTGAAGCGTATCAAGCCAGCTTCCTCGAAAGGTATCTACGTTAAGCGCGTTACCCTGAGCACCACCATGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACTGGTCGcgcc < 2:1294143/150‑1 (MQ=255) cTGATCGCTGACCTGAAGCGTATCAAGCCAGCTTCCTCGAAAGGTATCTACGTTAAGCGCGTTACCCTGAGCACCACCATGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGcgcc < 1:648934/150‑1 (MQ=255) tGATCGCTGACCTGAAGCGTATCAAGCCAGCTTCCTCGAAAGGTATCTACGTTAAGCGCGTTACCCTGAGCACCACCATGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGcgccg < 2:196944/150‑1 (MQ=255) gCGTATCAAGCCAGCTTCCTCGAAAGGTATCTACGTTAAGCGCGTTACCCTGAGCACCACCATGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTgggg > 2:1630372/1‑150 (MQ=255) aaGGTATCTACGTTAAGCGCGTTACCCTGAGCACCACCATGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATcc > 1:867839/1‑150 (MQ=255) gTTAAGCGCGTTACCCTGAGCACCACCATGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAgg < 1:324142/150‑1 (MQ=255) gcgTTACCCTGAGCACCACCATGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCcct > 1:1313022/1‑114 (MQ=255) gcgTTACCCTGAGCACCACCATGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCcct < 2:1313022/114‑1 (MQ=255) gTTACCCTGAGCACCACCATGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAg > 2:864356/1‑150 (MQ=255) ccaTGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGcgccgc < 1:1167826/76‑1 (MQ=255) ccaTGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGcgccgc > 2:1167826/1‑76 (MQ=255) ccaTGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAAtt > 2:1073220/1‑87 (MQ=255) ccaTGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAAtt < 1:1073220/87‑1 (MQ=255) ccaTGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCAGcc > 1:1449349/1‑150 (MQ=255) gCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCAGCCCACGCa > 2:1303945/1‑150 (MQ=255) cccAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCAg < 2:886385/141‑1 (MQ=255) cccAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCAg > 1:886385/1‑141 (MQ=255) aGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCAGCCCACGCAGATg > 1:1506317/1‑150 (MQ=255) gTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGCCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCAGCCCACGCAGATGGt > 2:313991/1‑150 (MQ=255) aTCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTggg < 2:535997/70‑1 (MQ=255) aTCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTggg > 1:535997/1‑70 (MQ=255) aTCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCAGCCCACGCAGATGGTGCTCCCGa > 2:1233898/1‑150 (MQ=255) tCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCAGCCCACGCAGATGGTGCTCCCGATTCGt < 2:1506317/150‑1 (MQ=255) cGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCAGCCCACGCAGATGGTGCTCCCGATTCGTTACCGAAt < 1:1630372/150‑1 (MQ=255) gCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAggcg < 2:1375672/93‑1 (MQ=255) gCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAggcg > 1:1375672/1‑93 (MQ=255) gCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCAGCCCACGCAGATGGTGCTCCCGATTCGTTACCGAATc > 1:380114/1‑150 (MQ=255) tgtAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCAGCCCACGCAGATg > 1:1526832/1‑118 (MQ=255) tgtAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCAGCCCACGCAGATg < 2:1526832/118‑1 (MQ=255) gAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCggggg < 2:842521/61‑1 (MQ=255) gAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCggggg > 1:842521/1‑61 (MQ=255) gcggcgCGACTGGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCAg > 1:354034/1‑94 (MQ=255) gcggcgCGACTGGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCAg < 2:354034/94‑1 (MQ=255) ggcgCGACTGGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCa > 1:341138/1‑91 (MQ=255) ggcgCGACTGGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCa < 2:341138/91‑1 (MQ=255) | TGAAGCCCTGATCGCTGACCTGAAGCGTATCAAGCCAGCTTCCTCGAAAGGTATCTACGTTAAGCGCGTTACCCTGAGCACCACCATGGGCCCAGGTCTGGTCATCGATCAGAGCTCGCTGAACGTGTAAGAACATGGCGGCGCGACCAGTCGCGCCGCCAGCAAAAATTGGGGTCCCTGCCTGGCGGGGGCTATCCAAGACCGTAGGCGGCGCAAGCCTTAAAACATCAGCCCACGCAGATGGTGCTCCCGATTCGTTACCGAATC > NC_002947/536135‑536401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |