| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 812,056 | G→A | 7.9% | L67L (CTG→TTG) | PP_0698 ← | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 812,056 | 0 | G | A | 7.9% | 214.0 / 7.4 | 77 | L67L (CTG→TTG) | PP_0698 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (31/38); new base A (3/3); total (34/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.93e-01 | |||||||||||
ATGGAAGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTGGCGGCTGACCGCGCCGTGAGTGACGTGCAAGTGCTCGGCGGCGCGCACGAAGCTCT > NC_002947/811910‑812199 | aTGGAAGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGGTTTGCGGCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGc > 2:457994/1‑150 (MQ=255) aGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGACGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGAc < 2:1596016/150‑1 (MQ=255) cgGCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTCGTGCCCTGCAAGGCaccacccag < 1:1168325/150‑4 (MQ=255) ggCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACc‑‑ggcg < 2:1359059/150‑1 (MQ=255) ggCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCCTGCAAGGCAcc > 1:1378866/1‑142 (MQ=255) ggCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCCTGCAAGGCAcc < 2:1378866/143‑2 (MQ=255) gcgcGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCgggg > 1:190708/1‑148 (MQ=255) gcgcGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCgggg < 2:190708/148‑1 (MQ=255) gcgcGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGt < 1:1239517/150‑1 (MQ=255) cgcgGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTg < 2:1046089/150‑1 (MQ=255) gATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑aa > 1:1407076/1‑150 (MQ=255) ccagcGTATGGCGATGGGCGGTTCGCAAGACAGCACCAGCACATTGGCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGc < 1:181272/150‑1 (MQ=255) ccagcGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGc > 2:463935/1‑150 (MQ=255) gcgcATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCg < 2:1038179/150‑1 (MQ=255) gcATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTCGTGCCCTGCAAGGCaccacccag > 1:1430949/1‑124 (MQ=255) gcATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTCGTGCCCTGCAAGGCaccacccag < 2:1430949/127‑4 (MQ=255) aTGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTg > 1:1079589/1‑150 (MQ=255) aTGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTTCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGt > 2:404322/1‑150 (MQ=255) cGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGaa < 2:291642/150‑1 (MQ=255) ggTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTc > 2:738979/1‑146 (MQ=255) ggTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTc < 1:738979/146‑1 (MQ=255) cGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGACGCTCGGCTGGGTGGTGGCTTGCATGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGtt < 1:610047/150‑1 (MQ=255) gCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGcc < 2:1471975/127‑1 (MQ=255) gCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGcc > 1:1471975/1‑127 (MQ=255) cAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGGCAAAATTG‑CCGGTTGCGGCGTTCGAACAGTTcc < 1:457994/150‑1 (MQ=255) aaGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGTTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCa > 2:1194242/1‑150 (MQ=255) aaGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCa > 2:1074823/1‑150 (MQ=255) aGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCAc < 2:1407076/150‑1 (MQ=255) agcaccagcacATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATgg < 2:1460955/118‑1 (MQ=255) agcaccagcacATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATgg > 1:1460955/1‑118 (MQ=255) gcaccagcacATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCaa < 2:1079589/150‑1 (MQ=255) caccagcacATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAg < 1:893872/150‑1 (MQ=255) tccagcacATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAgg < 1:980903/149‑1 (MQ=255) accagcacATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGt < 2:1572195/104‑1 (MQ=255) accagcacATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGt > 1:1572195/1‑104 (MQ=255) accagcacATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAgg < 1:1256499/150‑1 (MQ=255) cagcacATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCt > 2:596621/1‑150 (MQ=255) cagcacATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCt > 1:158568/1‑150 (MQ=255) gcacATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGccc > 2:29010/1‑114 (MQ=255) gcacATTGTCGCGAGCTTGTTGCTGCAGGCGCTCCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGccc < 1:29010/114‑1 (MQ=255) cacaTTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTttc < 1:748708/150‑1 (MQ=255) aTTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTttcttc > 1:891053/1‑150 (MQ=255) aTTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTttcttc > 1:618450/1‑150 (MQ=255) aTTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCCTCTTCGGCACGACC‑‑GCTGCGTGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTttcttc < 1:609620/150‑1 (MQ=255) ttGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATCGCCCGCTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTcc < 1:694460/150‑1 (MQ=255) cgcgAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCcagca < 1:404322/150‑1 (MQ=255) ttgCTGCAGGCGCTGCACGGCGCCTTCGAGTTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTg < 1:1194242/150‑1 (MQ=255) gctgcAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTggc > 2:1403798/1‑150 (MQ=255) gctgcAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTggc < 2:891053/150‑1 (MQ=255) gctgcAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTggc < 1:596621/150‑1 (MQ=255) gctgcAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGAGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTggc < 1:999243/150‑1 (MQ=255) ctgcAGGCGCTGCACGGCGCCTTCGAGGTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTggcg < 1:695685/150‑1 (MQ=255) ctgcAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTggcg > 2:848295/1‑150 (MQ=255) tgcAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCca < 2:360578/133‑1 (MQ=255) tgcAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCca > 1:360578/1‑133 (MQ=255) gcgcTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTGGCGGCTGAc < 2:1646468/150‑1 (MQ=255) gcgcTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGATGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTc > 2:342656/1‑108 (MQ=255) gcgcTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGATGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTc < 1:342656/108‑1 (MQ=255) cGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTGGCGGCTGACCGCGCCgt < 1:1074823/150‑1 (MQ=255) ggCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTGGCGGCTGACCGCGCCgtg < 1:848295/150‑1 (MQ=255) cTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑aaaa > 1:267535/1‑66 (MQ=255) cTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑aaaa < 2:267535/66‑1 (MQ=255) ttCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTGGCGGCTGACCGCGCCGTGAGTGAc > 2:800862/1‑150 (MQ=255) gCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAg < 1:546127/85‑1 (MQ=255) gCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAg > 2:546127/1‑85 (MQ=255) gAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCcag > 1:499292/1‑102 (MQ=255) gAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCcag < 2:499292/102‑1 (MQ=255) gAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTGGCGGCTGACCGCGCCGTGAGTGACGTGCAAGTGCTc > 2:491655/1‑150 (MQ=255) aaGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCca < 2:1358729/100‑1 (MQ=255) aaGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCca > 1:1358729/1‑100 (MQ=255) gATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTGGCGGCTGACCGCGCCGTTAGTGACGTGCAAGTGCTcggc > 1:961738/1‑150 (MQ=255) cccgccggtcgtGCCCTGCAAGGCACCACCCAGGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTGGCGGCTGACCGCGCCGTGAGTGACGTGCAAGTGCTcggcg > 1:1632223/7‑150 (MQ=38) tGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCAGGGGTGANG‑AAAATGGCNCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTGGCGGCTGACCGCGCCGTGAGTGACGTGCAAGTGCTCGGCGgcgcgc > 1:723702/1‑150 (MQ=255) gggTGGTGCCTTGGAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTGGCGGCTGACCGCGCCGTGAGTGACGTGCAAGTGCTCGGCGGCGCGCa < 1:463935/150‑1 (MQ=255) cTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTGGCGGCTGACCGCGCCGTGAGTGACGTGCAAGTGCTCGGCGGCGCGCACGAAGctct > 2:1342040/1‑150 (MQ=255) gCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCAc < 2:509970/61‑1 (MQ=255) gCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCAc > 1:509970/1‑61 (MQ=255) | ATGGAAGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACC‑‑GGCGGGGGTGAGG‑AAAATGGCCCGGTTGCGGCGTTCGAACAGTTCCACGCCAAGGCTTTCTTCCAGCAGGCGTATTTGGCGGCTGACCGCGCCGTGAGTGACGTGCAAGTGCTCGGCGGCGCGCACGAAGCTCT > NC_002947/811910‑812199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |