Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 956,588 | A→C | 9.3% | intergenic (+18/‑96) | alaC → / → PP_0818 | aminotransferase/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 956,588 | 0 | A | C | 9.3% | 142.9 / 8.2 | 54 | intergenic (+18/‑96) | alaC/PP_0818 | aminotransferase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (24/25); new base C (2/3); total (26/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.77e-01 |
CGGCTTTGGTGACTATGGGGACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCCTACTTCTGCGGCACTGGCTCGCACCGTTTC > NC_002947/956447‑956731 | cGGCTTTGGTGACTATGGGGACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGcccc < 2:1217586/150‑1 (MQ=255) ggCTTTGGTGACTATGGGGACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTACGGGCTGATGGTTTGGCTCGCAAGTAAGGCCAATGGGGCTGGGAAGCAGCCGCa > 2:818563/1‑150 (MQ=255) gCTTTGGTGACTATGGGGACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCaa > 2:117458/1‑150 (MQ=255) tttGGTGACTATGGGGACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCTTCGCAGCCCCattg < 1:305044/150‑4 (MQ=255) tATGGGGACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTgg < 2:479171/150‑1 (MQ=255) tATGGGGACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTgg > 1:602561/1‑150 (MQ=255) gggACGACCACGTGCGCTTTGCGTTGAGCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGa < 2:288823/150‑1 (MQ=255) ggACGACCATGTGCGCTTTGCTTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAg > 1:131397/1‑150 (MQ=255) ggACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAg < 2:517705/150‑1 (MQ=255) acgacCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCt > 1:923660/1‑150 (MQ=255) ccACGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTcc < 1:628342/150‑1 (MQ=255) tttGCGTTGATTCAGAACCAGGACCGTTTTCGCCAGGCCATCCGCGGGATCCGGCAAATTTTCCGGGCTGATGGTTTGGCTCTCAAGTTAGCCCAATTGGGGTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTc < 2:389907/150‑1 (MQ=255) cGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGt > 2:1434208/1‑150 (MQ=255) ttGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTa > 1:914913/1‑150 (MQ=255) gATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTAcc > 2:718396/1‑150 (MQ=255) tCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCTTCGCAGCCCCattggg < 2:864858/112‑6 (MQ=255) tCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCTTCGCAGCCCCattggg > 1:864858/1‑107 (MQ=255) tCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCg > 1:858076/1‑150 (MQ=255) agaACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTAc > 2:791221/1‑150 (MQ=255) aaCCAGGACCGTATTCTCCAGTCCATCCGCGGGATCCGTCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGc < 1:818563/150‑1 (MQ=255) aCCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCct < 2:1180277/108‑1 (MQ=255) aCCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCct > 1:1180277/1‑108 (MQ=255) cAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGt > 1:845233/1‑113 (MQ=255) cAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGt < 2:845233/113‑1 (MQ=255) cAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTc < 2:1375862/132‑1 (MQ=255) cAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTc > 1:1375862/1‑132 (MQ=255) ccGTATTCGCCAGGCCATCCGCGGGATCCGGCAAACGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTc < 1:990146/150‑1 (MQ=255) gTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAg < 2:914913/150‑1 (MQ=255) aTTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAAc > 2:1272237/1‑92 (MQ=255) aTTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAAc < 1:1272237/92‑1 (MQ=255) aTCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCAc > 2:400529/1‑150 (MQ=255) aTCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCAc > 1:727447/1‑150 (MQ=255) gcgGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTTTCatgaaa > 2:220707/1‑145 (MQ=255) cgGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAag < 1:117458/150‑1 (MQ=255) gATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAgaga < 2:168991/150‑1 (MQ=255) cGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATccc > 2:238144/1‑150 (MQ=255) ggCAAATGTTCCGGGCTGATGGTTTGGCTCTCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTTGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCCGCACTCATTTCTCACCAAAAAAATcccc > 2:497631/1‑150 (MQ=255) cAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCa < 1:718396/150‑1 (MQ=255) aaaTGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCTTCGCAGCCCCattg < 1:1169975/65‑4 (MQ=25) aaaTGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCTTCGCAGCCCCattg > 2:1169975/1‑62 (MQ=25) aTGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGa < 1:1394579/150‑1 (MQ=255) ccGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACTCCTACCGTCAGCACTCATTTCTCACCAAAGATATCCCCCATGAGTGTc < 2:602561/150‑1 (MQ=255) aTGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGc > 1:986895/1‑150 (MQ=255) tttGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGATCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCCTAc < 1:429545/150‑1 (MQ=255) tCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCCTACTTCTGc > 1:1218453/1‑150 (MQ=255) cGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCCTACTTCTGCg < 2:986895/150‑1 (MQ=255) gCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCa < 2:674316/134‑1 (MQ=255) gCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCa > 1:674316/1‑134 (MQ=255) aaGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCCTACTTCTGCGGCACTgg < 1:220707/150‑1 (MQ=255) cccAATGGGGCTGCGAAGCAGCGCCAACTGCCTCTTGGGAGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCATACTTCTGCGGCCCTGGCTc > 2:605703/1‑150 (MQ=255) tGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTATGTTCCCCGTCATCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCCTTCTTCTGAGGCACTGGCTCGCAcc < 2:131397/150‑1 (MQ=255) cTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCCTACTTCTGCGGCACTGGCTCGCACCGTTTc < 1:791221/150‑1 (MQ=255) gAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCa < 1:24125/69‑1 (MQ=255) gAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCa > 2:24125/1‑69 (MQ=255) | CGGCTTTGGTGACTATGGGGACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCCTACTTCTGCGGCACTGGCTCGCACCGTTTC > NC_002947/956447‑956731 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |