| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,822,231 | A→T | 10.4% | intergenic (+31/+27) | PP_mr22 → / ← fdxA | PrrB_RsmZ ncRNA/ferredoxin 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,822,231 | 0 | A | T | 10.4% | 127.6 / 6.0 | 47 | intergenic (+31/+27) | PP_mr22/fdxA | PrrB_RsmZ ncRNA/ferredoxin 1 |
| Reads supporting (aligned to +/- strand): ref base A (22/19); new base T (3/2); total (26/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.83e-01 | |||||||||||
ATGCACAGGCTTTCAGGATGAAGGCCAGGGACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGCCAGCTCGGCGTTCAGCTCGA > NC_002947/1822084‑1822376 | aTGCACAGGCTTTCAGGATGAAGGCCAGGGACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAg < 1:958452/150‑1 (MQ=255) gCTTTCAGGATGAAGGCCAGGGACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCtttt > 1:1139223/1‑150 (MQ=255) ttCAGGATGAAGGCCAGGGACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAATGGCCTTTTTcg > 1:1486447/1‑150 (MQ=255) aaGGATGAAGGCACGGGACAGCGCAAGAAGCGATTTCATCAGGATGATGTTTGCGACAAGCAGGGACTACGGAAAAACAGGTGGGCGGGTCAAACCGCCTCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGTAGTGCCTTTTTcgcg < 2:1497593/149‑1 (MQ=255) ggATGAAGGCCAGGGACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCACGCAGAGCTttttacccgac > 2:349014/1‑143 (MQ=255) gATGAAGGCCAGGGACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCt > 1:337763/1‑150 (MQ=255) cAGGGACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTAt > 1:985120/1‑150 (MQ=255) gACATCACAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAgg > 1:622606/1‑149 (MQ=255) tCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCTTCGGGCCttttttgtt > 1:1159699/1‑126 (MQ=255) tCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCTTCGGGCCttttttgtt < 2:1159699/130‑5 (MQ=255) gCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAACAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCa < 2:770272/150‑1 (MQ=255) aagCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAACGGCCCGAAATGCATCTTGGGCAGCTGGTCGCTATCATCGCTCCAGGTCg > 2:835482/1‑150 (MQ=255) agCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCTCGTAGGAAAACAAAAAAGGCCCGaa < 2:515360/108‑1 (MQ=255) agCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCTAGGAGGAAAACAAAAAAGGCCCGaa > 1:515360/1‑108 (MQ=255) tcatcaGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCtt < 2:1486447/150‑1 (MQ=255) tcaGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGACAATCTTGcc > 1:1535245/1‑150 (MQ=255) caGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCa < 2:622606/150‑1 (MQ=255) gatgatGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAgcgc > 2:789574/1‑126 (MQ=255) gatgatGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAgcgc < 1:789574/126‑1 (MQ=255) tttGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCAt > 2:1342163/1‑150 (MQ=255) gACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCAt > 1:113171/1‑150 (MQ=255) ggACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTg < 1:1072161/91‑1 (MQ=255) ggACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTg > 2:1072161/1‑91 (MQ=255) gAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAg < 2:113171/150‑1 (MQ=255) aaaaaaaTGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAgg < 2:696363/150‑1 (MQ=255) aTGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGc > 2:1034009/1‑62 (MQ=255) aTGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGc < 1:1034009/62‑1 (MQ=255) tgtgGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTCCt < 2:337763/150‑1 (MQ=255) tgGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATc > 2:1272566/1‑119 (MQ=255) tgGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATc < 1:1272566/119‑1 (MQ=255) cGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTcc > 2:1560084/1‑86 (MQ=255) cGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTcc < 1:1560084/86‑1 (MQ=255) tCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGt > 1:81936/1‑150 (MQ=255) tCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGt > 1:629441/1‑150 (MQ=255) cAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCTTTTTGCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTg < 1:1635132/150‑1 (MQ=255) aaaCCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGa > 1:718363/1‑150 (MQ=255) cGCCCCTTTTTTTGCTCGTTTGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGTTAtt > 2:1343253/1‑150 (MQ=255) ccccTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAg < 1:1290472/150‑1 (MQ=255) ccccTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAg < 2:1139223/150‑1 (MQ=255) ccGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATc > 2:967302/1‑90 (MQ=255) ccGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATc < 1:967302/90‑1 (MQ=255) ccGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGc < 2:691856/150‑1 (MQ=255) ccGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGCCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGc > 1:1520006/1‑150 (MQ=255) cGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTc < 2:1034171/116‑1 (MQ=255) cGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTc > 1:1034171/1‑116 (MQ=255) aaaaaGGCCCTTCGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGCCAGCTCGGCGTTc > 2:550488/1‑150 (MQ=255) aaaaaGGCCCTTCGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGCCAGCTCGGCGTTc > 2:1553415/1‑150 (MQ=255) aaaaGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGCCAGCTCGGCGTTCa < 2:629441/150‑1 (MQ=255) cccGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGCCAGCTCGGCGTTCAGCTCGa > 2:524729/1‑150 (MQ=255) | ATGCACAGGCTTTCAGGATGAAGGCCAGGGACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGCCATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGCCAGCTCGGCGTTCAGCTCGA > NC_002947/1822084‑1822376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |