Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,454,275 | T→C | 7.1% | N296S (AAC→AGC) | mfd ← | transcription‑repair coupling factor |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,454,275 | 0 | T | C | 7.1% | 164.4 / 2.5 | 56 | N296S (AAC→AGC) | mfd | transcription‑repair coupling factor |
Reads supporting (aligned to +/- strand): ref base T (26/26); new base C (2/2); total (28/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.06e-01 |
CCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTTTCTTCGAAGAACAGTGGCAGGTAGTACTCGATACCGGCGGGGATGATGCCGCTGGCCAGGTC > NC_002947/2454132‑2454423 | ccAGCTCTTCGCTGCTGACCA‑CACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGaa > 1:762656/1‑150 (MQ=255) cAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGaa > 2:89898/1‑150 (MQ=255) aGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAg > 2:949312/1‑150 (MQ=255) gCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGt < 2:1527813/150‑1 (MQ=255) ctTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCt < 1:1547729/150‑1 (MQ=255) gctgACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCggcggc > 1:1261915/1‑150 (MQ=255) gctgACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCggcggc < 1:1321664/150‑1 (MQ=255) accaccaccCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGt > 2:858855/1‑150 (MQ=255) caccaccCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTc < 1:89898/150‑1 (MQ=255) caccaccCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTc > 2:1527079/1‑150 (MQ=255) caccaccCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTc > 2:1332602/1‑150 (MQ=255) ccGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACAcc > 2:1133885/1‑150 (MQ=255) cGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCg < 2:1563080/150‑1 (MQ=255) ggCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGt < 1:9213/150‑1 (MQ=255) cTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGaa < 2:1261915/150‑1 (MQ=255) gCCGGGCGAAGCAATCTTCGACCGGCAGGGCTAGCCCGGGCGGCGGCAACAGCGGCCGGCGGAGGCCGCCGCGCCGGTCGCCATAACCCCCGCGCACGGCGTTCCAGTAGTGCTGGGCGGCCTGTTCCACACCGGGTAGCGGGACCCCCt > 2:367997/1‑150 (MQ=255) aaGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTgtcg < 1:1133885/150‑1 (MQ=255) aaTCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACATGGGAgtcggtcg > 1:1157380/1‑150 (MQ=255) aTCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGtcggtcgg > 1:1295707/1‑150 (MQ=255) tCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGc < 1:673817/150‑1 (MQ=255) ttCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAg < 1:88804/150‑1 (MQ=255) cACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCCTGCGGGCGTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTa < 1:1350789/150‑1 (MQ=255) aCCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGaa > 2:629545/1‑125 (MQ=255) aCCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGaa < 1:629545/125‑1 (MQ=255) ccGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGt > 1:35674/1‑150 (MQ=255) cGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTc > 2:1240753/1‑105 (MQ=255) cGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTc < 1:1240753/105‑1 (MQ=255) ggAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACa < 2:1526845/150‑1 (MQ=255) gAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTa > 2:517504/1‑110 (MQ=255) gAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTa < 1:517504/110‑1 (MQ=255) cTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACa < 1:537526/143‑1 (MQ=255) cTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACa > 2:537526/1‑143 (MQ=255) cTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGa > 1:546654/1‑150 (MQ=255) cTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGa < 1:1631368/150‑1 (MQ=255) tCGGCCGGCGGCAACAGCGGCCGGCCGCGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAg > 1:458262/1‑150 (MQ=255) gcggcAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTttctt > 1:1535462/1‑150 (MQ=255) gcggcAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTttctt < 1:363525/150‑1 (MQ=255) cAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGTTCGGCAGGTAGTCGAACAGGGTCGAGGTTTCTTCgaa < 1:1332602/150‑1 (MQ=255) tgttgccgccggccgAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTTTCTTCgaag > 1:170744/8‑150 (MQ=255) ggccggcTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGTGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTTTCTTCGAAGAACAGt < 2:1064732/150‑1 (MQ=255) ggccggcTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTTTCTTCGAAGAACAGt > 2:281918/1‑150 (MQ=255) gcTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTTTCTTCGAAGAACAGTGGCAg > 1:148417/1‑150 (MQ=255) cTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTTTCTTCGAAGAACAGTGGCAgg < 2:1295707/150‑1 (MQ=255) gTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTTTCTTCGAAGAACAGTGGCAGgtagta > 2:87696/1‑150 (MQ=255) gTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGCTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTttcttc < 1:1489795/129‑1 (MQ=255) gTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGCTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTttcttc < 1:1489678/129‑1 (MQ=255) gTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGCTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTttcttc > 2:1489795/1‑129 (MQ=255) gTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGCTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTttcttc > 2:1489678/1‑129 (MQ=255) cggcggTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGATGTTTCTTCGAAGAACAGTGGCAGGTAGTACTCGATa < 2:236720/150‑1 (MQ=255) cggTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTTTCTTCGAAGAACAGTGGCAGGTAGTACTCGATACcg < 2:546654/150‑1 (MQ=255) cTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACATGGGTGTCGGTCGGCAGGTAGCCGAACAGCCTCGACGTATCTTTGTAGAACGGTGTCATTTAGTACTCGATACcggcgg < 2:1008175/150‑1 (MQ=255) ttCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGACCAGGGTCGAGGTTTCTTCGAAGAACAGTGGCAGGTCGTACTCGCTACCGGCggg > 2:733084/1‑150 (MQ=255) ttCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTTTCTTCGAAGAACAGTGGCAGGTAGTACTCGATACCGGCggg > 2:461480/1‑150 (MQ=255) aTAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTTTCTTCGAAGAACAGTGGCAGGTAGTACTCGATACCGGCGGGgat < 2:170744/150‑1 (MQ=255) aTAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTTTCTTCGAAGAACAGTGGCAGGTAGTACTCGATACCGGCGGGgat > 1:434327/1‑150 (MQ=255) gCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTTTCTTCGAAGAACAGTGGCAGGTAGTACTCGATACCGGCGGGGATGATGc < 1:461480/150‑1 (MQ=255) gtcgtTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTgtcggtc > 1:1326412/1‑64 (MQ=255) gtcgtTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTgtcggtc < 2:1326412/64‑1 (MQ=255) gtTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGt < 2:1360405/71‑1 (MQ=255) gtTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGt > 1:1360405/1‑71 (MQ=255) gtTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGGCGAACAGGGTCGAGGTTTCTTCGAAGAACAGTGGCAGGTAGTACTCGATACCGGCGGGGATGATGCCGCTGGCCAgggc > 1:716759/1‑148 (MQ=255) | CCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCCGGCTGAGGTCGCCGCGGCGGTCTTCATAACGCCCGCGCACGTCGTTCCAGAAGTGCTCGGCGGCCTGTTCCACACCGGGTAGCGAGAACACCTGGGTGTCGGTCGGCAGGTAGTCGAACAGGGTCGAGGTTTCTTCGAAGAACAGTGGCAGGTAGTACTCGATACCGGCGGGGATGATGCCGCTGGCCAGGTC > NC_002947/2454132‑2454423 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |