Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,839,269 | C→G | 11.8% | intergenic (+46/‑134) | ccoP‑I → / → PP_4254 | cbb3‑type cytochrome c oxidase subunit/hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,839,269 | 0 | C | G | 11.8% | 117.2 / 6.5 | 41 | intergenic (+46/‑134) | ccoP‑I/PP_4254 | cbb3‑type cytochrome c oxidase subunit/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (16/20); new base G (2/3); total (18/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTGCACCCCCACCGAACACAACTAAGCTTGTTGCCTCAGT > NC_002947/4839144‑4839404 | aTGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCCCCCGCGCGGGGCGCGATATCCGCCccacc > 2:380220/1‑150 (MQ=255) tGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCccacca > 1:47022/1‑150 (MQ=255) tGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCccacca > 2:885754/1‑150 (MQ=255) aCAAGGTGCACCTGCTGTCGGCTTACGTGTATAGCCTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCgcggc > 2:694315/1‑128 (MQ=255) aCAAGGTGCACCTGCTGTCGGCTTACGTGTATAGCCTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCgcggc < 1:694315/128‑1 (MQ=255) aaGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGa < 2:1263118/132‑1 (MQ=255) aaGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGa > 1:1263118/1‑132 (MQ=255) aCCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCCCGCCGATCTGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCaaa < 1:100749/150‑1 (MQ=38) tgGCGGCTTACGTGTATAGCCTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTac > 2:154203/1‑150 (MQ=255) gcggcTTACGTGTATAGCCTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGCAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATAACCGCCCCCCCCTCACCCTCAAACCtttccc > 2:708418/1‑146 (MQ=38) ggcTTACGTGTATAGCCTGTCGCAGGATGGTTCGGCTGAGGCTCTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACAccc > 2:639405/1‑150 (MQ=255) tACGTGTATAGCCTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGAATTTGCCGCCGGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGc < 2:874965/150‑1 (MQ=255) ccTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGa > 1:1024748/1‑100 (MQ=255) ccTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGa < 2:1024748/100‑1 (MQ=255) ccTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCccac > 1:483517/1‑112 (MQ=255) ccTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCccac < 2:483517/112‑1 (MQ=255) ccTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAAc < 2:1195731/118‑1 (MQ=255) ccTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAAc > 1:1195731/1‑118 (MQ=255) tGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCaaa > 1:65997/1‑113 (MQ=255) tGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCaaa < 2:65997/113‑1 (MQ=255) ttCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATcccc > 2:1238246/1‑136 (MQ=255) ttCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATcccc < 1:1238246/136‑1 (MQ=255) cGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATAccccc < 1:127401/150‑1 (MQ=255) gCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTc > 2:1270146/1‑129 (MQ=255) gCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCGTACACCCCCGCCCCACCATCCCCCTc < 1:1270146/129‑1 (MQ=255) cTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCgccgcc < 1:154203/150‑1 (MQ=255) ggCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAAc < 1:628527/93‑1 (MQ=255) ggCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAAc > 2:628527/1‑93 (MQ=255) ccAAGTGAGTTCGCCGAAAGGCATCTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCcccttccct < 1:652273/150‑1 (MQ=255) aaGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATcccc < 2:979270/114‑1 (MQ=255) aaGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATcccc > 1:979270/1‑114 (MQ=255) tGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTGCAc < 2:1103962/150‑1 (MQ=255) gCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCTGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTGCACCCCCAcc < 2:878901/150‑1 (MQ=255) cGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTa > 2:538859/1‑81 (MQ=255) cGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTa < 1:538859/81‑1 (MQ=255) cGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCccac < 2:67969/95‑1 (MQ=255) cGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCccac > 1:67969/1‑95 (MQ=255) cgccgccTGTGAGATCGAGCGCCGCCCGGGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCTCCGCCGCCCCCTTCCCTTGCACCCCCACCGAACACAACTAAg < 1:380220/149‑1 (MQ=255) cgccTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAGACCATACCCCCACCGCCGCCCCCTTCCCTTGCACCCCCACCGAACACAACTAAGCtt < 1:708418/150‑1 (MQ=255) cTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTGCACCCCCACCGAACACAACTAAGCttgtt < 2:47022/150‑1 (MQ=255) tCGCGCCCCCCCCCCGCGTCTCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTGCACCCCCACCGAACACAACTAAGCTTGTTGCCTCAGt < 2:1117129/150‑1 (MQ=255) | ATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGATGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTGCACCCCCACCGAACACAACTAAGCTTGTTGCCTCAGT > NC_002947/4839144‑4839404 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |