Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,304,643 | T→C | 7.7% | E886G (GAG→GGG) | recC ← | multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,304,643 | 0 | T | C | 7.7% | 146.9 / 2.6 | 52 | E886G (GAG→GGG) | recC | multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit |
Reads supporting (aligned to +/- strand): ref base T (19/29); new base C (2/2); total (21/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-01 |
CGAAACCGGCTAGCGGCAGCAGACCGCAGGCCTGCAGGCGTCGGGCCTGGGCGCGCAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCATTCAGCTGGTGCAGACTCAGGGCTTCAGCGTCCTGATAAGGCGGCAAG > NC_002947/5304494‑5304780 | cGAAACCGGCTAGCGGCAGCAGACCGCAGGCCTGCAGGCGTCGGGCCTGGGCGCGCAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGct > 2:634264/1‑150 (MQ=255) aaaCCGGCTAGCGGCAGCAGACCGCAGGCCTGCAGGCGTCGGGCCTGGGCGCGCAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGctct < 1:1631020/150‑1 (MQ=255) gCTAGCGGCAGCAGACCGCAGGCCTGCAGGCGTCGGGCCTGGGCGCGCAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTcc > 1:1225549/1‑150 (MQ=255) tAGCGGCAGCAGACCGCAGGCCTGCAGGCGTCGGGCCTGGGCGCGCAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGAGCCCTTCGTcctc < 2:147705/150‑3 (MQ=255) aGCGGCAGCAGACCGCAGGCCTGCAGGCGTCGGGCCTGGGCGCGCAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCggg < 2:565766/150‑1 (MQ=255) aGCGGCAGCAGACCGCAGGCCTGCAGGCGTCGGGCCTGGGCGCGCAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCggg < 2:1143528/150‑1 (MQ=255) aCCGCAGGCCTGCAGGCGTCGGGCCTGGGCGCGCAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGTGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTc > 1:1002412/1‑150 (MQ=255) aCCGCAGGCCTGCAGGCGTCGGGCCTGGGCGCGCAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTc > 2:1285846/1‑150 (MQ=255) gCCTGCAGGCGTCGGGCCTGGGCGCGCAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGcc > 1:316034/1‑150 (MQ=255) aGGCGTCGGGCCTGGGCGCGCAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAg > 2:909932/1‑150 (MQ=255) gTCGGGCCTGGGCGCGCAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTaca < 2:1498097/150‑1 (MQ=255) ggCCTGGGCGCGCAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCtt < 2:61085/150‑1 (MQ=255) ggCCTGGGCGCGCAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCtt > 2:1628311/1‑150 (MQ=255) gcgcAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGctct < 2:373783/100‑1 (MQ=255) gcgcAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGctct > 1:373783/1‑100 (MQ=255) cgcAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCgctgg < 1:1628311/150‑1 (MQ=255) ttGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTgaagaa < 1:909932/150‑1 (MQ=255) tCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGc < 1:648050/150‑1 (MQ=255) gCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGt > 2:468075/1‑150 (MQ=255) tCCGGTTCGGACAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCggg < 2:474685/150‑1 (MQ=255) ccGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGt < 2:403313/150‑1 (MQ=255) cGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCggg < 1:1052809/85‑1 (MQ=255) cGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCggg > 2:1052809/1‑85 (MQ=255) cGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTg < 1:355063/150‑1 (MQ=255) cGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTg < 1:1449889/150‑1 (MQ=255) gTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGgc < 1:280082/150‑1 (MQ=255) gTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATAGCGGACGAAGGGCTCGGCGGCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGgc > 1:610366/1‑150 (MQ=255) gCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCgctgg < 2:436083/120‑1 (MQ=255) gCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCgctgg > 1:436083/1‑120 (MQ=255) gCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTAAAACGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCaag > 1:499387/1‑150 (MQ=255) ccAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCg < 1:1432373/133‑1 (MQ=255) ccAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCg > 2:1432373/1‑133 (MQ=255) cAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCTCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCaagaa < 1:293431/150‑1 (MQ=255) cAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCaagaa < 2:499387/150‑1 (MQ=255) aaGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCaagaag < 2:1225549/150‑1 (MQ=255) gcggcgCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCa > 1:1553917/1‑150 (MQ=255) gcgcCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCATTc < 2:1553917/150‑1 (MQ=255) gCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCATTCAGCTGGt < 1:1076198/150‑1 (MQ=255) cTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCATTCAGCTGGTGCAGa < 2:610366/150‑1 (MQ=255) cACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCATTCAGCTGGTGCAGACTCa < 2:554125/150‑1 (MQ=255) cACTGACGACGTAGCGTTGCCGGGTATCGAAGACGAAGGGCTCTTCGTCCGGGGTGGGAGCTTCCAGCGCCTCAAAGTACACATTCAAGCGCTAGCTGAAGAAGAGAAGAACCGGGAGGAGAAAGAAGTAATTCAGCTGGTGCAGAATCa > 2:1157767/1‑150 (MQ=255) ccTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCATTCAGCTGGTGCAGACTCAg < 2:924133/149‑1 (MQ=255) gcCGTAGCGTTGCAGGGTTTTGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACGTCTTCAAGCGCGGGCTGTAGACGTGCCGTACCGGGTGGGGCAAGAAGTCATTCAGCTGGTGCAGACTCAGGGCTTc < 2:1508540/150‑1 (MQ=255) gcCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGt > 2:1393348/1‑110 (MQ=255) gcCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGt < 1:1393348/110‑1 (MQ=255) ccGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCATTCAGCTGGTGCAGACTCAGGGCTTCa < 2:413940/150‑1 (MQ=255) ccGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCATTCAGCTGGTGCAGACTCAGGGCTTCa < 2:1002412/150‑1 (MQ=255) tCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCATTCAGCTGGTGCAGACTCAGGGCTTCAGCGTCCTGATAAggcggc > 2:469931/1‑150 (MQ=255) ccggACGAAGAGCCCTTCGTCCTGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCATTCAGCTGGTGCAGACTCAGGGCTTCAGCGTCCTGATAAGGCGGCaa > 2:188782/3‑150 (MQ=255) aGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCATTCAGCTGGTGCAGACTCAGGGCTTCAGCGTCCTGATAAGGCGGCAAg > 1:45078/1‑150 (MQ=255) ggACGAAGAGCCCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGgc < 1:1395598/90‑1 (MQ=255) ggACGAAGAGCCCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGgc > 2:1395598/1‑90 (MQ=255) cGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCg < 1:420432/76‑1 (MQ=255) cGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCg > 2:420432/1‑76 (MQ=255) gAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCATTCAGCTGGTGCAGACTCAGGGCTTCAGCGTCCTGATAAgg > 1:1350264/1‑138 (MQ=255) gAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCATTCAGCTGGTGCAGACTCAGGGCTTCAGCGTCCTGATAAgg < 2:1350264/138‑1 (MQ=255) ctctTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCATTCAGCt < 1:714210/98‑1 (MQ=255) ctctTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCATTCAGCt > 2:714210/1‑98 (MQ=255) | CGAAACCGGCTAGCGGCAGCAGACCGCAGGCCTGCAGGCGTCGGGCCTGGGCGCGCAAGGCTTGTTCGGCGTTGTCCGGTTCGGCCAAGGCGGCGCCAAGCAGGCTTTCACTGGCGCCGTAGCGTTGCAGGGTATCGAGGACGAAGGGCTCTTCGTCCGGGGTCGGCGCTTCCAGCGCCTCAAAGTACACCTTCAAGCGCTGGCTGAAGAAGTGCCGTACCGGGTGGCGCAAGAAGTCATTCAGCTGGTGCAGACTCAGGGCTTCAGCGTCCTGATAAGGCGGCAAG > NC_002947/5304494‑5304780 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |