New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 573411370 (1.200)16 (0.310) 12/234 3.2 20.4% intergenic (‑83/+74) proY/hutH proline (histidine) APC transporter/histidine ammonia‑lyase
?NC_002947 = 5734136 63 (1.220)intergenic (‑106/+51) proY/hutH proline (histidine) APC transporter/histidine ammonia‑lyase
Rejected: Coverage evenness skew score above cutoff.

GTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5733951‑5734113
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgctcccacagAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAGGTCTCAAGCGCGGGCTAAGTGCCCGC  <  NC_002947/5734136‑5733989
                                                                                                                                                                                                                                                                                                                       
GTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACG                                                                                                                                                                   >  2:1183677/1‑150
            GAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACA                                                                                                                                                       <  1:1183677/150‑1
                                         GGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCCGCTGGGCGG‑CCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGG                                                                                                                         <  1:364612/150‑1
                                          GCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCGCGCCCGCTCCCGCAGAAGTAGGTGCAAAACACCATCCCCTGTGG                                                                                                                         <  1:375496/150‑1
                                              TTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTG                                                                                                                          <  2:1046786/145‑1
                                              TTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTG                                                                                                                          >  1:1046786/1‑145
                                                    CGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCC                                                                                                                               >  1:565038/1‑134
                                                    CGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCC                                                                                                                               <  2:565038/134‑1
                                                                 TTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCCGCTGGGC‑GGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTG                                                                                                                          <  1:437226/125‑1
                                                                 TTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCCGCTGGGC‑GGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTG                                                                                                                          >  2:437226/1‑125
                                                                      CTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGC                                                                                                             <  1:1165225/134‑1
                                                                      CTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGC                                                                                                             >  2:1165225/1‑134
                                                                              ATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGGGC‑GGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCC                                                                                                           >  2:1205114/1‑127
                                                                              ATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGGGC‑GGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCC                                                                                                           <  1:1205114/127‑1
                                                                              ATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGG                                                                                                                   <  2:1150467/120‑1
                                                                              ATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGG                                                                                                                   >  1:1150467/1‑120
                                                                                        CTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGG                                                                                                                   <  2:546570/110‑1
                                                                                        CTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGAACGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGG                                                                                                                   >  1:546570/1‑110
                                                                                                                                                     GCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAGGTCTCAAGCGCGGG              >  2:184015/1‑150
                                                                                                                                                         GCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAGGTCTCAAGCGCGGGC             <  1:833281/147‑1
                                                                                                                                                         GCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAGGTCTCAAGCGCGGGC             >  2:833281/1‑147
                                                                                                                                                           TCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAGGTCTCAAGCGCGGGCTAAGT        >  1:979700/1‑150
                                                                                                                                                           TCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAGGTCTCAAGCGCGGGCTAAGT        <  1:184015/150‑1
                                                                                                                                                               ACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAGGTCTCAAGCGCGGGCTAAGTGCCC    >  2:1344773/1‑150
                                                                                                                                                                 AGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAGGTCTCAAGCGCGGGCTAAGTGCCCGC  <  2:979700/150‑1
                                                                                                                                                                                                                                                                                                                       
GTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5733951‑5734113
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgctcccacagAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAGGTCTCAAGCGCGGGCTAAGTGCCCGC  <  NC_002947/5734136‑5733989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.