New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 485249834 (0.580)9 (0.220) 8/182 3.4 29.8% intergenic (‑124/+173) recR/ybaB recombination protein RecR/nucleoid‑associated broad specificity regulator
?NC_002947 = 4852557 19 (0.470)intergenic (‑183/+114) recR/ybaB recombination protein RecR/nucleoid‑associated broad specificity regulator
Rejected: Coverage evenness skew score above cutoff.

GCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAGCTGC  >  NC_002947/4852428‑4852704
                                                                                                                                 |                                                                                                                                                    
gCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGcc                                                                                                                                  <  2:572085/150‑1 (MQ=255)
    cAAAGCGCCTCCCCCAACACCTGGAAGCTCTGCATTTGTGTGGGAGCGGCCTCGTGCCCCGAAAGGGCTGCGAAGCCGCCCCTGCACTCTGTGCTGCGAAGCCGACATCCCGGGGCCGCTTCGCCCCCCTCTCGCACCACAAGGCCGCTc                                                                                                                              <  2:658512/150‑1 (MQ=255)
           ccTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCCCTCTGGGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGcc                                                                                                                                  >  1:544440/1‑139 (MQ=255)
           ccTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGcc                                                                                                                                  <  2:544440/139‑1 (MQ=255)
                         tGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGaca                                                                                                                                         >  1:236106/1‑118 (MQ=255)
                         tGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGaca                                                                                                                                         <  2:236106/118‑1 (MQ=255)
                         tGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGa                                                                                                                                           >  1:282566/1‑116 (MQ=255)
                         tGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGa                                                                                                                                           <  2:282566/116‑1 (MQ=255)
                                                    gCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAGATCTCCGCAAAAAAAAc                                                                             >  1:732151/1‑150 (MQ=255)
                                                    gCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAAc                                                                             >  2:1195817/1‑150 (MQ=255)
                                                            tagcgAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAACTCTCCGCAAAAAAAACCGCCACtg                                                                     >  2:322507/3‑150 (MQ=255)
                                                            tCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACtg                                                                     >  1:1128218/1‑150 (MQ=255)
                                                              gcgAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACtgtt                                                                   >  2:973485/1‑150 (MQ=255)
                                                              gcgAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACtgtt                                                                   >  2:641408/1‑150 (MQ=255)
                                                                     ggCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGAcct                                                                                                            <  2:1219125/103‑2 (MQ=255)
                                                                     ggCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGAcct                                                                                                            >  1:1219125/1‑102 (MQ=255)
                                                                        tGCGGAGCAGCCTCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAgcggcg                                                         >  2:57629/1‑150 (MQ=255)
                                                                        tGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAgcggcg                                                         <  1:1195817/150‑1 (MQ=255)
                                                                              gcagcCCCGGCACGCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTg                                                   >  2:1205254/1‑150 (MQ=255)
                                                                               cagcCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGa                                                  <  2:1128218/150‑1 (MQ=255)
                                                                                  ccccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGt                                                >  2:285310/1‑150 (MQ=255)
                                                                                    ccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATc                                             <  1:1205254/150‑1 (MQ=255)
                                                                                                  tgcGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGa                               >  2:69451/1‑150 (MQ=255)
                                                                                                          tGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATc                       <  1:641408/150‑1 (MQ=255)
                                                                                                           gAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCt                      >  2:1268579/1‑150 (MQ=255)
                                                                                                                          cTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAAACCGCCACTGTTGTCAGCGGCGGtttt                                                    <  2:485187/106‑1 (MQ=255)
                                                                                                                          cTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAAACCGCCACTGTTGTCAGCGGCGGtttt                                                    >  1:485187/1‑106 (MQ=255)
                                                                                                                             cgcgCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAGATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAGCt    <  2:732151/150‑1 (MQ=255)
                                                                                                                               cgcCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAGCTGc  <  1:57629/150‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                                    
GCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAGCTGC  >  NC_002947/4852428‑4852704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.