Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_002947 | 4,964,700 | C→T | E235K (GAA→AAA) | fleQ ← | transcriptional regulator FleQ |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,964,700 | 0 | C | T | 98.0% | 162.8 / ‑4.4 | 50 | E235K (GAA→AAA) | fleQ | transcriptional regulator FleQ |
Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (23/26); total (23/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.52e-01 |
CGATGATGCGCACGTCGATGCTTTGGGTCTTGTTGCTACCCACGCGCTCGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTCGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGATCGCGCCACAGTTGACCGGCACGAACGGCGCTTCGCGGCGCTTGGAATGGTAGTGCAGG > NC_002947/4964553‑4964845 | ccatgatgCGCCCGTCGATGCTTTGTGTCTTGTTGCTACCCACGCGCTCTAAGGTACGCTCCTCCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCACGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGa < 2:357440/148‑1 (MQ=38) gcACGTCGATGCTTTGGGTCTTGTTGCTACCCACGCGCTCGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCgg > 2:133877/1‑150 (MQ=255) tGCTTTGGGTCTTGTTGCTACCCACGCGCTCGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTgg < 2:293226/150‑1 (MQ=255) gCTTTGGGTCTTGTTGCTACCCACGCGCTCGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGt < 2:992425/150‑1 (MQ=255) tttGGGTCTTGTTGCTACCCACGCGCTCGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGa > 2:914788/1‑150 (MQ=255) tttGGGTCTTGTTGCTACCCACGCGCTCGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGa > 2:166674/1‑150 (MQ=255) ttGGGTCGGGTCGCTACCCCCCCGCTCGAAGGCACGGCCCTGCAGCACACGCATCATCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGAt < 2:606527/150‑1 (MQ=37) ccACGCGCTCGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATg < 1:1406688/134‑1 (MQ=255) ccACGCGCTCGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATg > 2:1406688/1‑134 (MQ=255) ccACGCGCTCGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGgcgc > 2:656235/1‑150 (MQ=255) ccACGCGCTCGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGgcgc < 1:166674/150‑1 (MQ=255) cACGCGCTCGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGcc > 1:496632/1‑150 (MQ=255) cACGCGCTCGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGcc < 1:914788/150‑1 (MQ=255) cgcTCGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTtc < 2:1018236/150‑1 (MQ=255) cTCGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTtctc < 1:656235/150‑1 (MQ=255) cGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGt < 2:1234088/150‑1 (MQ=255) cGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGt < 1:1379505/150‑1 (MQ=255) gAAGGTACGCTCCTGCAGCACACGCAGCAGCTTTACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGAt > 2:750992/1‑123 (MQ=255) gAAGGTACGCTCCTGCAGCACACGCAGCAGCTTTACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGAt < 1:750992/123‑1 (MQ=255) ggTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTCGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGcc < 2:266900/150‑1 (MQ=255) tACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCgc > 2:593921/1‑149 (MQ=255) gCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTg < 1:73352/113‑1 (MQ=255) gCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTg > 2:73352/1‑113 (MQ=255) cacGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCca < 1:443224/150‑1 (MQ=255) acGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGc < 2:1231767/85‑1 (MQ=255) acGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGc > 1:1231767/1‑85 (MQ=255) agcagcTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCcagc < 1:362135/147‑1 (MQ=255) agcagcTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCcagc > 2:362135/1‑147 (MQ=255) agcagcTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCagcagc > 1:1382518/1‑150 (MQ=255) agcTTGACCTGCATCGGCAACGGCATGTCGCCGATTTGTGCTAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCg < 1:1401913/150‑1 (MQ=255) cTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGAt > 2:69178/1‑150 (MQ=255) tCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGATCgcgc < 2:496632/150‑1 (MQ=255) cGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGATCGCGCCACAGtt < 2:1125599/150‑1 (MQ=255) gCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGATCGCGCCACAGTTGACCGGCAc > 1:95801/1‑150 (MQ=255) ccGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCg < 2:609738/120‑1 (MQ=255) ccGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCg > 1:609738/1‑120 (MQ=255) cGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCCCGGCCGGGATCGCGCCACAGTTGACCGGCCCgc > 2:413470/1‑149 (MQ=255) tttCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGG‑CCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGATCGCGCCACAGTTGAc < 1:310248/138‑1 (MQ=255) tttCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGG‑CCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGATCGCGCCACAGTTGAc > 2:310248/1‑138 (MQ=255) gtcgAGGAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGATCGCGCCACAGTTGACCGGCACGAACGgcgc > 2:603802/1‑150 (MQ=255) ggAACAGGGTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGATCGCGCCACAGTTGACCGGCACGAACGGCGCTTcgc > 1:1312277/1‑150 (MQ=255) gTACCGCCGTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGATCGCGCCACAGTTGACCGGCACGAACGGCGCTTCGCGGCGCTTg < 1:133877/150‑1 (MQ=255) gTACCGCCGCTAGCCACTTTACCAGGCCAGTCACGGCTTGTTATTGCCCCGGTAAAGGCTCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGATCGCGCCACAGTTGACCGGCACGAACGGCGCTTCGCGGCGCTTg < 2:13488/150‑1 (MQ=255) gccgTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGATCGCGCcaca < 2:662863/111‑1 (MQ=255) gccgTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGATCGCGCcaca > 1:662863/1‑111 (MQ=255) ccgTTGGCCAGTTTGAAGCGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGATCGCGCCACAGTTGACCGGCACGAACGGCGCTTCGCGGCGCTTGGAATgg > 1:264756/1‑150 (MQ=255) ccgTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGAGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGGTCGCGCCACAGTTGACCGGCACGAACGGCGCTTCGCGGCGCTTGGAATgg > 1:472292/1‑150 (MQ=255) cgTTGGCCAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGAGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGGTCGCGCCACAGTTGACCCGCACGAACGGCGCTTCGCGGCGCTTGGAATGGt < 2:472292/150‑1 (MQ=255) cAGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGATCGCGCCACAGTTGACCGGCACGAACGGCGCTTCGCGGCGCTTGGAATGGTAGTGCAg > 2:376206/1‑150 (MQ=255) aGTTTGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGATCGCGCCACAGTTGACCGGCACGAACGGCGCTTCGCGGCGCTTGGAATGGTAGTGCAgg < 1:69178/150‑1 (MQ=255) | CGATGATGCGCACGTCGATGCTTTGGGTCTTGTTGCTACCCACGCGCTCGAAGGTACGCTCCTGCAGCACACGCAGCAGCTTGACCTGCATCGGCAACGGCATGTCGCCGATTTCGTCGAGGAACAGGGTACCGCCGTTGGCCAGTTCGAAACGCCCGGCACGGCTGGTGATGGCCCCGGTAAAGGCGCCCTTCTCGTGGCCGAACAGTTCGCTTTCCAGCAGCTCGGCCGGGATCGCGCCACAGTTGACCGGCACGAACGGCGCTTCGCGGCGCTTGGAATGGTAGTGCAGG > NC_002947/4964553‑4964845 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |