New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3828223 =	10 (0.110)	29 (0.350)	21/252	4.1	69.6%	intergenic (‑204/+155)	PP_3381/PP_3382	transposase/gluconate 2‑dehydrogenase cytochrome c subunit
	?	NC_002947	3828259 =	16 (0.190)					intergenic (‑240/+119)	PP_3381/PP_3382	transposase/gluconate 2‑dehydrogenase cytochrome c subunit
Rejected: Coverage evenness skew score above cutoff.

CCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAA  >  NC_002947/3828211‑3828371             |                                                                                                                                                     cccTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGCGa             <  1:617828/150‑1 (MQ=32) cccTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGCGa             >  2:1178248/1‑150 (MQ=32)  ccTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAg            >  1:1985135/1‑150 (MQ=32)   cTAACAAAGCAAAAGGCGGCTGGCCCTCCCGGGATAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAgg           <  2:1985135/150‑1 (MQ=16)    tAACAAATCAAAAGTCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAggg          <  2:754180/150‑1 (MQ=21)       cAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGgcgc       >  2:1416112/1‑150 (MQ=37)        aaaGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCt      >  2:301770/1‑150 (MQ=38)         aaGCAAAGGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCCCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTg     >  2:1609401/1‑150 (MQ=255)            cAAAGGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGaaa  <  1:1609401/150‑1 (MQ=255)            cAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGaaa  <  1:1232126/150‑1 (MQ=40)             |                                                                                                                                                     CCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGCGAGGGCGCTGAAA  >  NC_002947/3828211‑3828371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.