| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 445,106 | Δ1 bp | 5.7% | intergenic (+76/‑212) | PP_0367 → / → PP_0368 | hypothetical protein/acyl‑CoA dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 445,106 | 0 | C | . | 5.7% | 256.9 / 10.9 | 88 | intergenic (+76/‑212) | PP_0367/PP_0368 | hypothetical protein/acyl‑CoA dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base C (38/42); new base . (3/2); total (43/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.99e-01 | |||||||||||
CTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAA > NC_002947/444965‑445254 | cTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGacaac > 1:96922/1‑142 (MQ=255)cTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGacaac < 2:96922/142‑1 (MQ=255)cTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGt < 1:639644/150‑1 (MQ=255) tCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTc < 2:2004319/150‑1 (MQ=255) cGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCt < 1:2018767/150‑1 (MQ=255) cGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCt < 1:2106317/150‑1 (MQ=255) gcAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAA‑AATTGTTGTCTGATc < 1:2093979/150‑1 (MQ=255) aaaaGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCg < 1:899660/149‑1 (MQ=255) aaaGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTTCGATCAGACAACAATT‑TTGTCTGGTCgg > 1:803268/1‑150 (MQ=255) aaaGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCgg < 1:904918/150‑1 (MQ=255) aaaGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCgg < 1:744248/150‑1 (MQ=255) aaaGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCgg > 2:1427558/1‑150 (MQ=255) aGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTcgcg < 1:1999955/150‑1 (MQ=255) ggCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCgg < 1:1477739/150‑1 (MQ=255) ggCATCCGACGAAATGCTGGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCgg < 2:1170660/150‑1 (MQ=255) acgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGACCAGACAAAATTG‑TTGTCTGATCggac < 1:1614015/132‑3 (MQ=37) acgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGACCAGACAA‑AATTGTTGTCTGATCggac > 2:1614015/1‑130 (MQ=37) gaaacacTTGGCCGGATCATCGACACCTACGCCGGAATACTGGCGTGATCCCCTATTTCAGGGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCCAACCCGc > 2:1895178/7‑150 (MQ=38) aaTGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTc < 1:705319/150‑1 (MQ=255) ttGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTcc < 2:362450/149‑1 (MQ=255) ttGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGGATTCGTCCGATCAGACAACAATT‑TTGTTTGGTCGGGCCCCTTCGCGGGCAAACCCGCTCCTACa > 2:1721268/1‑150 (MQ=38) ggCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAg > 1:1327990/1‑150 (MQ=255) gCCGGATCATCGACACCTACGCCTTAATACTTGCGTCATCCCCTGTTTCAGCGCGTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAgg < 1:1791648/150‑1 (MQ=255) tcatcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTg < 2:1409422/107‑1 (MQ=255) tcatcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTg > 1:1409422/1‑107 (MQ=255) tcatcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgt < 2:1440627/150‑1 (MQ=255) catcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgtg < 1:1221654/150‑1 (MQ=255) tcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGtggc > 1:1135506/1‑150 (MQ=255) acacCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCaa < 2:1210364/122‑1 (MQ=255) acacCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCaa > 1:1210364/1‑122 (MQ=255) acacCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGtggcat‑g > 2:772153/1‑150 (MQ=255) tACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAAtt‑tt > 2:539838/1‑91 (MQ=255) tACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAAtt‑tt < 1:539838/91‑1 (MQ=255) tACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGgcat‑ggcatg > 1:876552/1‑150 (MQ=255) gCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGGATGGGTCCGATCAGACAAAAAAT‑TTGTTTTGTCGGGTCTTTTCGTGGGGCAGCCCCCTGCTACAAGGGATTGTGgtat‑tggatgtat > 2:1733230/1‑147 (MQ=255) gCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGAcaacaa < 2:1151776/84‑1 (MQ=255) gCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGAcaacaa > 1:1151776/1‑84 (MQ=255) gCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGAGAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACt > 2:850765/1‑150 (MQ=255) gCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgtg > 2:235868/1‑137 (MQ=255) gCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgtg < 1:235868/137‑1 (MQ=255) cTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCgg < 2:200585/108‑1 (MQ=255) cTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCgg > 1:200585/1‑108 (MQ=255) aaTACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGAttt < 1:377236/150‑1 (MQ=255) tCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTc < 2:1837623/150‑1 (MQ=255) aTCCCCTATTTCAGCGCCTGCCTTGTAGGAGAGGGCTTGCACGCGAATGAGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACAGATTTGCCATATTTCGt > 2:863205/1‑150 (MQ=38) tCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGGTTGTGGCAT‑GGCATGACTGATTTTCTATTTTTCGtt > 2:1613041/1‑149 (MQ=255) cccTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACaa < 2:1672428/108‑1 (MQ=255) cccTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACaa > 1:1672428/1‑108 (MQ=255) cTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGAGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGTAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGt > 2:1893416/1‑150 (MQ=255) aGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGc > 1:1554858/1‑150 (MQ=255) cgcCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCAc < 2:933761/150‑1 (MQ=255) cgcCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCAc < 1:1721268/150‑1 (MQ=255) acaaggcctTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCAc > 1:1306341/6‑150 (MQ=255) gcctgcctTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCAcc > 2:2139130/1‑150 (MQ=255) ctTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAA‑AATTGTTGTCTGATc < 2:1718001/58‑1 (MQ=14) gTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCAt < 1:295919/150‑1 (MQ=255) gTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTATGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCAt < 1:1427558/150‑1 (MQ=255) aGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgt > 1:1505493/1‑93 (MQ=255) aGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgt < 2:1505493/93‑1 (MQ=255) gAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑TGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCtt < 2:1135506/150‑1 (MQ=255) gccgacTTGCCCGCGAATGCGTCCGATCAGGCACCAATT‑TTGTCTGCTCGGGCCTCTTCGCGGGCCAGCCCCCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGa < 1:1689606/145‑1 (MQ=255) gCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCTGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGAttt < 1:2010303/108‑1 (MQ=255) gCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCTGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGAttt > 2:2010303/1‑108 (MQ=255) gCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGATTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTgt > 2:1563502/1‑149 (MQ=255) gattGCCCGCGAAGAGGCCCGACCAGACAA‑AATTGTTGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGa > 1:537064/3‑150 (MQ=17) ttGCCCGCGAAGAGGCCCGACCAGACAAAATTG‑TTGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGaaa > 1:1864945/1‑150 (MQ=17) cccGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGCCACG‑GCCATGGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACTATAGTCCATCCTTGACAGAAAGCt > 1:987994/1‑150 (MQ=255) ccGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTc < 2:1552864/131‑1 (MQ=255) ccGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTc > 1:1552864/1‑131 (MQ=255) ccGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAg > 2:2092147/1‑147 (MQ=255) ccGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAg < 1:2092147/147‑1 (MQ=255) ccGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTg > 1:1546793/1‑150 (MQ=255) ccGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTg > 2:34923/1‑150 (MQ=255) cagcgAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCAGCTCCTACAAGGGTTTGtggcat‑g < 2:2309448/83‑1 (MQ=255) cagcgAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCAGCTCCTACAAGGGTTTGtggcat‑g > 1:2309448/3‑85 (MQ=255) cgcgAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGa < 2:1327990/150‑1 (MQ=255) cgcgAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGa > 2:683446/1‑150 (MQ=255) cgcgAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTAGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGa < 1:850765/150‑1 (MQ=255) gcgAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAg > 1:1507490/1‑150 (MQ=255) gcgAATCCCTCCGCACACACACCCATT‑CTCACTGGCCGCGCCTCTTCGCGCGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATATTCCATCCTTGACAGAAAGCTGAg > 2:1195093/1‑150 (MQ=255) aTGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTaa < 1:683446/150‑1 (MQ=255) tGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTaaa < 1:772153/150‑1 (MQ=255) gTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGt > 2:600014/1‑150 (MQ=255) tCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTc > 1:2064669/1‑54 (MQ=255) tCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTc < 2:2064669/54‑1 (MQ=255) tCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgt > 2:571499/1‑68 (MQ=255) tCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgt < 1:571499/68‑1 (MQ=255) ccGACCAGACAA‑AATTGTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTaa > 1:1672442/1‑150 (MQ=255) gATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGc < 2:2334502/45‑1 (MQ=255) gATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGt > 1:1284087/1‑150 (MQ=255) aGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTc < 2:891706/90‑1 (MQ=255) aGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTc > 1:891706/1‑90 (MQ=255) caccccaaCT‑TTGTCTTGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCaa < 1:2147994/145‑1 (MQ=255) acaacaATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCaaa > 1:1276353/1‑150 (MQ=255) aacaaTT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAaaca > 2:2163301/1‑150 (MQ=255) aacaaTT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAaaca > 1:1555428/1‑150 (MQ=255) acacTT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAaacaa < 2:803268/150‑1 (MQ=255) | CTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCAT‑GGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAA > NC_002947/444965‑445254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |