| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,644,635:1 | +G | 7.7% | intergenic (+65/‑64) | yhiN → / → PP_4954 | FAD/NAD(P)‑binding domain‑containing oxidoreductase/membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,644,635 | 1 | . | G | 7.7% | 510.2 / 36.9 | 130 | intergenic (+65/‑64) | yhiN/PP_4954 | FAD/NAD(P)‑binding domain‑containing oxidoreductase/membrane protein |
| Reads supporting (aligned to +/- strand): ref base . (57/63); new base G (5/5); total (62/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.08e-01 | |||||||||||
Only 100 of 131 total aligned reads displayed.
AGTGCTGGATGTCACCGGCCACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCAGCTACAGCATCCGGGTCACCATTGC > NC_002947/5644486‑5644781 | gCTGGATGTCACCGGCCACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGc > 1:1439089/1‑150 (MQ=255) cACCGGCCACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGccc < 1:841120/150‑1 (MQ=255) aCCTGCCACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACACCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGcccc > 1:1227773/1‑150 (MQ=255) aCCGGCCACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGcccc > 2:409788/1‑150 (MQ=255) cGGCCACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCaa > 2:1150106/1‑150 (MQ=255) ggCCACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAAt < 1:559321/150‑1 (MQ=255) gCCACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATa > 2:2315899/1‑150 (MQ=255) cACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAAc > 1:214340/1‑150 (MQ=255) cACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAAc < 2:1120887/150‑1 (MQ=255) cTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGCGCGCAGCG‑GCCCCAATAAcggc < 2:1284802/150‑4 (MQ=255) cTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCgg < 1:413557/150‑1 (MQ=255) tGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCCGGTTATTGGGGCGCGCAGCG‑GCCCCAATAAcggc < 1:626086/150‑4 (MQ=38) tGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGc > 2:161968/1‑150 (MQ=255) tttCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGACCGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGaaa < 1:1693524/149‑1 (MQ=255) cTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTAGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGaaa > 1:2007130/1‑150 (MQ=255) ttCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAg > 2:1539231/1‑150 (MQ=255) ttCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAg > 1:2238477/1‑150 (MQ=255) aaCTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCCATAACCGGCCCTGAAAGGTa > 1:1040607/1‑150 (MQ=255) aaCTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTa < 2:2238477/150‑1 (MQ=255) ttCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTAttc < 1:345306/150‑1 (MQ=255) ccAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTAttctt > 1:1541498/1‑150 (MQ=255) ccAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTAttctt < 2:299331/150‑1 (MQ=255) ccAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTAttctt < 1:1114669/150‑1 (MQ=255) cAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCTCCCCAATAACCGGCCCTGAAAGGTAttcttc < 2:1439089/150‑1 (MQ=255) aGTGGGGTTAGCTATTGGCCAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATtcttct < 2:1227773/150‑1 (MQ=255) aGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTa > 1:616367/1‑143 (MQ=255) aGTGGGCTTGGGCATCGCCGAACGCCGCCGCGCATTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATtcttct < 1:1117645/150‑1 (MQ=255) gTGGGCTTGGGCATCGGCGAACGCCGCCGCGGAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATtcttct > 2:1440635/1‑149 (MQ=255) gTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATtcttct < 1:1440635/149‑1 (MQ=255) gCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGCGCGCAGCG‑GCCCCAATaa < 1:2047192/122‑1 (MQ=255) gCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGCGCGCAGCG‑GCCCCAATaa > 2:2047192/1‑122 (MQ=255) gCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCa > 1:977433/1‑150 (MQ=255) gggCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCTCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGc < 2:688124/150‑1 (MQ=255) gCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTAttctt > 1:486127/1‑137 (MQ=255) gCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTAttctt < 2:486127/137‑1 (MQ=255) cATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTCGGCTGCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTg > 1:1461100/1‑150 (MQ=255) aTCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTATCATCACCGctagg > 2:498118/1‑146 (MQ=255) tCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTACTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGc > 1:2144301/1‑150 (MQ=255) cGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCa < 2:1864989/150‑1 (MQ=255) gCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAgg > 1:1949569/1‑150 (MQ=255) gCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTACTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAgg < 2:2144301/150‑1 (MQ=255) gAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGcc < 2:1949569/150‑1 (MQ=255) gAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGcc > 2:536287/1‑150 (MQ=255) aCGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCcat < 2:214340/150‑1 (MQ=255) ccgccgcGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCcatcat > 2:1409020/1‑150 (MQ=255) gccgcGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAAc < 2:129794/102‑1 (MQ=255) gccgcGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAAc > 1:129794/1‑102 (MQ=255) ccgcGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTc < 1:1647102/150‑1 (MQ=255) gcAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCa > 1:631275/1‑134 (MQ=255) gcAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCa < 2:631275/134‑1 (MQ=255) gTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTACTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGc > 1:2120281/1‑150 (MQ=255) tagagtagaATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTcc > 2:1577933/1‑150 (MQ=255) tagagtagaATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGCCCGTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTcc < 1:872403/150‑1 (MQ=255) gagtagaATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCgt < 1:1539231/150‑1 (MQ=255) gtagaATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCgtca < 2:1599175/150‑1 (MQ=255) tagaATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGc < 1:1829471/138‑1 (MQ=255) tagaATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGc > 2:1829471/1‑138 (MQ=255) gaATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATtcttct < 1:769545/102‑1 (MQ=255) gaATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATtcttct > 2:769545/1‑102 (MQ=255) gaATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATc > 1:1314723/1‑132 (MQ=255) gaATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATc < 2:1314723/132‑1 (MQ=255) aaTCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCgtcagtca > 1:794500/1‑150 (MQ=255) cTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCgtcagt > 1:700483/1‑144 (MQ=255) cTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCgtcagt < 2:700483/144‑1 (MQ=255) cTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGc < 1:390166/150‑1 (MQ=255) tttCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCCGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCg > 1:1776626/1‑150 (MQ=255) tttCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCg > 1:1876247/1‑150 (MQ=255) tttCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCg > 2:1990657/1‑150 (MQ=255) gcgcagcaCGGAATGCGTCTTGCTGGCCCGTGCTTGGCGTC‑TTTATTCGGGC‑CCCTTCGCGCCCCAATAACCGGTCTTAAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCg < 1:522954/148‑1 (MQ=255) agcagcACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGc > 2:2277682/1‑150 (MQ=255) aCGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTgg < 1:1409020/150‑1 (MQ=255) gAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGc < 1:161968/150‑1 (MQ=255) gAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGc > 1:1250897/1‑150 (MQ=255) aCGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATc > 2:236619/1‑111 (MQ=255) aCGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATc < 1:236619/111‑1 (MQ=255) ttcttGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCgtca < 1:1088205/122‑1 (MQ=255) ttcttGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCgtca > 2:1088205/1‑122 (MQ=255) ttcttGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGACCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGAc < 2:2091099/150‑1 (MQ=255) ttcttGCTGGCCCGTGCTCGGCGCC‑GTTATTGGGTC‑CTCTGCTCGCCCCAAGAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGAc < 2:1776626/150‑1 (MQ=255) gCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTc > 2:568987/1‑128 (MQ=255) gCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTc < 1:568987/128‑1 (MQ=255) tGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCa > 2:148700/1‑150 (MQ=255) gCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCAGc < 2:1196802/150‑1 (MQ=255) gCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCAGc < 1:722326/150‑1 (MQ=255) cGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCa < 2:1953150/145‑1 (MQ=255) cGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCa > 1:1953150/1‑145 (MQ=255) gTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCAGCTACa < 2:787507/150‑1 (MQ=255) gCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCtgtg > 1:538129/1‑125 (MQ=255) gCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCtgtg < 2:538129/125‑1 (MQ=255) cc‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCa > 1:1823744/1‑82 (MQ=255) cc‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCa < 2:1823744/82‑1 (MQ=255) cggTTATTGGGGCGCGCAGCG‑GCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTTATCAAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCAGCTACAGCATCCGGGt > 1:1210481/3‑150 (MQ=255) cggTTATTGGGGCGCGCAGCG‑GCCCCAATAA‑CGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCAGCTACAGCATCCggg > 2:1237590/3‑148 (MQ=39) cggTTATTGGGGCGCGCAGCG‑GCCCCAATAA‑CGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCAGCTACAGCATCCggg < 1:1237590/146‑1 (MQ=39) gTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCAGCTACAGCATCCGGGTCa > 1:1534037/1‑150 (MQ=255) aTTGGGGCGCGCAGCG‑GCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGAc > 1:213196/1‑122 (MQ=255) aTTGGGGCGCGCAGCG‑GCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGAc < 2:213196/122‑1 (MQ=255) gggC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCGGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAg > 1:773963/1‑121 (MQ=255) gggC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCGGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAg < 2:773963/121‑1 (MQ=255) gggC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCAGCTACAGCATCCGGGTCACCATTGc < 2:1534037/150‑1 (MQ=255) | AGTGCTGGATGTCACCGGCCACCTGGGCGGCTTCAACTTCCAGTGGGCTTGGGCATCGGCGAACGCCGCCGCGCAGTTCGTGTAGAGTAGAATCCTTTCAGCAGCACGGAACGCTTCTTGCTGGCCCGTGCTTGGCGCC‑GTTATTGGGGC‑CGCTGCGCGCCCCAATAACCGGCCCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCAGCTACAGCATCCGGGTCACCATTGC > NC_002947/5644486‑5644781 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |