| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 74499 | 120 (1.360) | 5 (0.070) | 3/200 | NT | 6.3% | intergenic (+87/+11) | PP_0063/PP_0064 | lipid A biosynthesis lauroyl acyltransferase/hypothetical protein |
| ? | NC_002947 | 5897872 = | 51 (0.720) | intergenic (‑216/+18) | PP_5172/PP_5173 | hypothetical protein/RND family transporter | |||||
GCTATGTGCGCGAGTACCCCAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/74327‑74499‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcgcgggtaaacccgctcctacCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACC > NC_002947/5897872‑5898019 GCTATGTGCGCGAGTACCCCAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTA > 1:1251581/1‑150 GCGCCAGTACCCCAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGG < 1:813414/150‑1 CGCGAGTACCCCAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCACTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCAACGACGTATTCGCGGG > 1:1331855/1‑150 GCGAGGACCCCAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGT > 2:35418/1‑150 GTACCCCAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAAC < 2:1552754/150‑1 GTACCCCAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGACCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAAC < 1:94569/150‑1 TACCCCAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACC > 2:2015170/1‑150 CCCCAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCGCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAACCCCc > 2:590755/1‑149 CCCCAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGGACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACCCG > 1:2145413/1‑150 CCCAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGGGATGTTGGATTCACCGACGTATGCGCCGGTAAACCCGC > 1:1983110/1‑150 CCCAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACCCGC > 1:209948/1‑150 CCCAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACCCGC > 2:2050013/1‑150 CCCAGCCAGTACATGTGGAGCATGAAGCGCTCAAGGTGGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACCCGC > 1:2301438/1‑150 aAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACCCGCTC < 2:1771217/149‑1 CAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACCCGCTC > 1:463928/1‑150 CCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACCCGCTCCTA > 2:632891/1‑150 CAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGGACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACCCGCTCCTAC < 2:2145413/150‑1 CAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACCCGCTCCTAC < 1:1401461/150‑1 CAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACCCGCTCCTAC > 1:446024/1‑150 GCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACC > 1:1476533/1‑121 GCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACC < 2:1476533/121‑1 AGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCG > 2:1316639/1‑105 AGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCG < 1:1316639/105‑1 GTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAAC < 1:315290/84‑1 GTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAAC > 2:315290/1‑84 ACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACCCGCTCCTAC < 1:1542715/80‑1 ACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACCCGCTCCTAC > 2:1542715/1‑80 CCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGT > 1:2048471/1‑150 CCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGT > 2:1049245/1‑150 GCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCG > 1:2101125/1‑150 GCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGT < 2:798360/102‑1 GCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGT > 1:798360/1‑102 TTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAG < 1:1049245/150‑1 GCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCC > 1:1404067/1‑150 ACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCC > 1:2245163/1‑150 ACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGAT < 2:1386759/117‑1 ACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGAT > 1:1386759/1‑117 ACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAG > 1:1691608/1‑87 ACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCCGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAG < 2:1691608/87‑1 CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCC < 1:1484388/150‑1 CCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCC < 1:976262/150‑1 GCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAG < 2:2048471/150‑1 CTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACA < 1:201433/150‑1 ACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACC > 1:1672977/1‑150 ACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACA < 2:1174428/67‑1 ACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACA > 1:1174428/1‑67 GCTATGTGCGCGAGTACCCCAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGGCTGGCGAGCCGCGCTGGTATTAAGCCATTCACCGTCCTCTGTAGGAACGGGTTTACCCGCGAATGCGATGTTGGATTCACCGACGTATTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/74327‑74499‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcgcgggtaaacccgctcctacCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACC > NC_002947/5897872‑5898019 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |