New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	771606 =	96 (1.090)	5 (0.060)	5/236	NT	5.1%	coding (1287/1389 nt)	PP_0662	threonine synthase
	?	NC_002947	771634 =	93 (1.110)					coding (1315/1389 nt)	PP_0662	threonine synthase

TTGGCGGTGAGCTCGGCGAGAATGCGCTCGTCGAGGGGGTCGAGGATGCGCTTCATCGCCCAGCCTGCAACCGGGTCAACAAGGCATGAACACCGGCCAGGTCGTCAGGTGCCAACAGCGGCCCATCGCCCGCTGTGCCGACCGCGCCGGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/771760‑771606 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcGATGGGCCGCTGTTGGCACCTGACGACCTGGCCGGTGTTCATGCCTTGTTGACCCGGTTGCAGGCTGGGCGATGAAGCGCATCCTCGACCCCCTCGACGAGCGCATTC  >  NC_002947/771634‑771741                                                                                                                                                                                                                                                                         TTGGCGGTGAGCTCGGCGAGAATGCGCTCGTCGAGGGGGTCGAGGATGCGCTTCATCGCCCAGCCTGCAACCGGGTCAACAAGGCATGAACACCGGCCAGGTCGTCAGGTGCCAACAGCGGCCCATCGCCCGCTGTGCCGACCGCGCCGG                                                                                                                   <  1:858112/150‑1  TGGCGGTGAGCTCGGCGAGAATGCGCTCGTCGAGGGGGTCGAGGATGCGCTTCATCGCCCAGCCTGCAACCGGGTCAACAAGGCATGAACACCGGCCAGGTCGTCAGGTGCCAACAGCGGCCCATCGCCCGCTGTGCCGACCGCGCCGGC                                                                                                                  <  1:1532820/150‑1    GCGGTGAGCTCGGCGAGAATGCGCTCGTCGAGGGGGTCGAGGATGCGCTTCATCGCCCAGCCTGCAACCGGGTCAACAAGGCATGAACACCGGCCAGGTCGTCAGGTGCCAACAGCGGCCCATCGCCCGCTGTGCCGACCGCGCCGGCGG                                                                                                                <  1:1743339/150‑1     CGGTGAGCTCGGCGAGAATGCGCTCGTCGAGGGGGTCGAGGATGCGCTTCATCGCCCAGCCTGCAACCGGGTCAACAAGGCATGAACACCGGCCAGGTCGTCAGGTGCCAACAGCGGCCCATCGCCCGCTGTGCCGACCGCGCCGGCGGG                                                                                                               >  1:1970871/1‑150     CGGTGAGCTCGGCGAGAATGCGCTCGTCGAGGGGGTCGAGGATGCGCTTCATCGCCCAGCCTGCAACCGGGTCAACAAGGCATGAACACCGGCCAGGTCGTCAGGTGCCAACAGCGGCCCATCGCCCGCTGTGCCGACCGCGCCGGCGGG                                                                                                               >  1:2107931/1‑150     CGGTGAGCTCGGCGAGAATGCGCTCGTCGAGGGGGTCGAGGATGCGCTTCATCGCCCAGCCTGCAACCGGGTCAACAAGGCATGAACACCGGCCAGGTCGTCAGGTGCCAACAGCGGCCCATCGCCCGCTGTGCCGACCGCGCCGGCGGG                                                                                                               <  1:235699/150‑1     CGGTGAGCTCGGCGAGAATGCGCTCGTCGAGGGGGTCGAGGATGCGCTTCATCGCCCAGCCTGCAACCGGGTCAACAAGGCATGAACACCGGCCAGGTCGTCAGGTGCCAACAACGGCCCATCGCCCGCTGTGCCGACCGCGCCGGCGGG                                                                                                               >  2:1111661/1‑150                              GTCGAGGGGGTCGAGGATGCGCTTCATCGCCCAGCCTGCAACCGGGTCAACAAGGCATGAACACCGGCCAGGTCGTCAGGTGCCAACAGCGGCCCATCGCCCGCTGTGCCGACCGCGCCGG                                                                                                                   <  1:714005/121‑1                              GTCGAGGGGGTCGAGGATGCGCTTCATCGCCCAGCCTGCAACCGGGTCAACAAGGCATGAACACCGGCCAGGTCGTCAGGTGCCAACAGCGGCCCATCGCCCGCTGTGCCGACCGCGCCGG                                                                                                                   >  2:714005/1‑121                                 GAGGGGGTCGAGGATGCGCTTCATCGCCCAGCCTGCAACCGGGTCAACAAGGCATGAACACCGGCCAGGTCGTCAGGTGCCAACAGCGGCCCATCGCCCGCTGTGCCGACCGCGCCGGCG                                                                                                                 >  1:2025839/1‑120                                 GAGGGGGTCGAGGATGCGCTTCATCGCCCAGCCTGCAACCGGGTCAACAAGGCATGAACACCGGCCAGGTCGTCAGGTGCCAACAGCGGCCCATCGCCCGCTGTGCCGACCGCGCCGGCG                                                                                                                 <  2:2025839/120‑1                                                                                                                  AACAGCGGCCCATCGCCCGCTGTGCCGACCGCGCCGGCGGGCGATGGGCCGCTGTTGGCACCTGACGACCTGGCCGGTGTTCATGCCTTGTTGACCCGGTTGCAGGCTGGGCGATGAAGCGCATCCTCGACCCCCTCGACGAGCGCATTC  >  1:482922/1‑150                                                                                                                                GCCCGCTGTGCCGACCGCGCCGGCGGGCGATGGGCCGCTGTTGGCACCTGACGACCTGGCCGGTGTTCATGCCTTGTTGACCCGGTTGC                                                 <  1:2163922/89‑1                                                                                                                                GCCCGCTGTGCCGACCGCGCCGGCGGGCGATGGGCCGCTGTTGGCACCTGACGACCTGGCCGGTGTTCATGCCTTGTTGACCCGGTTGC                                                 >  2:2163922/1‑89                                                                                                                                 CCCGCTGTGCCGACCGCGCCGGCGGGCGATGGGCCGCTGTTGGCACCTGACGACCTGGCCGGTGTTCATGCCTTGTTGACCCGGTTGCAGGCTGGGCGATGAAGCGCATCCTCGACCCCCTCGACGAGC        <  1:1215191/129‑1                                                                                                                                 CCCGCTGTGCCGACCGCGCCGGCGGGCGATGGGCCGCTGTTGGCACCTGACGACCTGGCCGGTGTTCATGCCTTGTTGACCCGGTTGCAGGCTGGGCGATGAAGCGCATCCTCGACCCCCTCGACGAGC        >  2:1215191/1‑129                                                                                                                                                                                                                                                                         TTGGCGGTGAGCTCGGCGAGAATGCGCTCGTCGAGGGGGTCGAGGATGCGCTTCATCGCCCAGCCTGCAACCGGGTCAACAAGGCATGAACACCGGCCAGGTCGTCAGGTGCCAACAGCGGCCCATCGCCCGCTGTGCCGACCGCGCCGGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/771760‑771606 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcGATGGGCCGCTGTTGGCACCTGACGACCTGGCCGGTGTTCATGCCTTGTTGACCCGGTTGCAGGCTGGGCGATGAAGCGCATCCTCGACCCCCTCGACGAGCGCATTC  >  NC_002947/771634‑771741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.