| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1427331 = | NA (NA) | 9 (0.110) | 4/234 | NT | NA | coding (1222/1422 nt) | PP_1250 | group II intron‑encoding maturase |
| ? | NC_002947 | 1427349 = | NA (NA) | coding (1240/1422 nt) | PP_1250 | group II intron‑encoding maturase | |||||
CAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1427486‑1427331‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggctgAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACT > NC_002947/1427349‑1427497 CAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGG > 2:1604921/1‑150CAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGG > 1:581080/1‑150CAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCCCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGG > 2:947364/1‑150 AGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCTCATCAAGTTTCTCATCCTCGTGGGA < 2:1973769/150‑1 AGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGA > 1:1119717/1‑150 AGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGA < 2:474282/150‑1 aCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAG > 2:2083913/2‑150 GCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGCATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTACTCGCTCAACCCCAGGCGCATAAAGTTTCTCCGCCTCGGGGGAG > 2:1032002/1‑150 GCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAt > 1:655034/1‑149 GCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAG > 1:4699/1‑150 GCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAG < 2:1122850/150‑1 CCCGAGCCGGTCTCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAGG > 2:2168689/1‑150 CCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGGGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACGTCGGCAATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAGG > 1:2178102/1‑150 CCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAGG > 2:2158474/1‑150 CGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAGGCT < 1:1528434/150‑1 GAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAGGCTG > 1:730181/1‑150 TTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGACATACACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGG < 1:713032/150‑1 CTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTGAGAAACTTGA < 1:1279439/92‑1 CTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTGAGAAACTTGA > 2:1279439/1‑92 GGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTAGGGTTGA < 1:1159005/104‑1 GGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTAGGGTTGA > 2:1159005/1‑104 CAGCCTCGTGGGAGGCTGAGAAACTTGATGCGCCTAGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGT < 1:1067490/139‑1 CAGCCTCGTGGGAGGCTGAGAAACTTGATGCGCCTAGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGT > 2:1067490/1‑139 CCTCGTGGGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTG > 2:494676/1‑89 CCTCGTGGGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTG < 1:494676/89‑1 GAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTTAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTC < 2:2099388/150‑1 GGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGA < 1:654753/150‑1 GGCTGAGAAACTTGACGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGA < 1:2010476/150‑1 GCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGAT > 2:2315694/1‑150 TGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATAC < 2:1870014/150‑1 TGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGA < 1:1381219/147‑1 TGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGA > 2:1381219/1‑147 GAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACT > 2:1816983/1‑150 GAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACT < 2:1631161/150‑1 GAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACT > 1:266093/1‑150 GAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACT < 2:2316364/150‑1 GAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACT > 1:2285121/1‑150 GAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCT > 1:467345/1‑138 GAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCT < 2:467345/138‑1 GAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTAGGACCTGCTCGGGCTGATCTCGATACT < 2:273159/150‑1 GAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGC > 1:350013/1‑110 GAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGC < 2:350013/110‑1 CAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1427486‑1427331‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggctgAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACT > NC_002947/1427349‑1427497 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |