| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1561044 = | 91 (1.030) | 6 (0.070) | 6/240 | NT | 6.3% | coding (1089/1875 nt) | pctA | methyl‑accepting chemotaxis protein PctA |
| ? | NC_002947 | 1561078 = | 89 (1.040) | coding (1055/1875 nt) | pctA | methyl‑accepting chemotaxis protein PctA | |||||
GGGCGACCTGACCAAGCGCCTGCACATCCACAGCCACGACGAATTCGGTGTCCTCGGCAACGCCTTCAACCGCTTCGTCGAACGCATTCACAGCAGCATTCGCGAAGTGTCCTCAGCCACCGAGCAGGTCAACGAAGTGGCCCTGC‑GGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1561194‑1561044‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgGCTGAGGACACTTCGCGAATGCTGCTGTGAATGCGTTCGACGAAGCGGTTGAAGGCGTTGCCGAGGACACCGAATTCGTCGTGGCTGTGGATGTGCAGGCGCTTGGTCAGGTCGCCC > NC_002947/1561078‑1561194 GGGCGACCTGACCAAGCGCCTGCACATCCACAGCCACGACGAATTCGGTGTCCTCGGCAACGCCTTCAACCGCTTCGTCGAACGCATTCACAGCAGCATTCGCGAAGTTTCCTCAGCCACCGAGCAGGTCAACGAAGTGGCCCTGC‑GGGT < 2:603790/150‑1 GGCGACCTGACCAAGCGCCTGCACATCCACAGCGACGACGAATTCGGTGTCCTCGGAAACGCCTTCAACCGCTTCGTTGAACGCATTCACAGCAGCATTCGCGAAGTGTCCTCAGCCACCGAGCAGGTCAACGAAGTGGCCCTGC‑GGGTG > 2:287964/1‑150 GGCGACCTGACCAAGCGCCTGCACATCCACAGCCACGACGAATTCGGTGTCCTCGGCAACGCCTTCAACCGCTTCGTCGAACGCATTCACAGCAGCATTCGCGAAGTGTCCTCAGCCACCGAGCAGGTCAACGAAGTGGCCCTGC‑GGGTG < 1:1628323/150‑1 ATTCGGTGTCCTCGGCAACGCCTTCAACCGCTTCGTCGAACGCATTCACAGCAGCATTCGCGAAGTGTCCTCAGCCACCGAGCAGGTCAACGAAGTGGCCCTGC‑GG > 1:1885668/1‑106 ATTCGGTGTCCTCGGCAACGCCTTCAACCGCTTCGTCGAACGCATTCACAGCAGCATTCGCGAAGTGTCCTCAGCCACCGAGCAGGTCAACGAAGTGGCCCTGC‑GG < 2:1885668/106‑1 GCGAAGTGTCCTCAGCCACCGAGCAGGTCAACGAAGTGGCCCTGC‑GGGTGGCTGAGGACACTTCGCGAATGCTGCTGTGAATGCGTTCGACGAAGCGGTTGAAGGCGTTGCCGAGGACACCGAATTCGTCGTGGCTGTGGATGT > 1:457710/1‑144 GCGAAGTGTCCTCAGCCACCGAGCAGGTCAACGAAGTGGCCCTGC‑GGGTGGCTGAGGACACTTCGCGAATGCTGCTGTGAATGCGTTCGACGAAGCGGTTGAAGGCGTTGCCGAGGACACCGAATTCGTCGTGGCTGTGGATGT < 2:457710/144‑1 TCAGCCACCGAGCAGGTCAACGAAGTGGCCCTGC‑GGGTGGCTGAGGACACTTCGCGAATGCTGCTGTGAATGCGTTCGACGAAGCGGTTGAAGGCGTTGCCGA < 1:320058/103‑1 TCAGCCACCGAGCAGGTCAACGAAGTGGCCCTGC‑GGGTGGCTGAGGACACTTCGCGAATGCTGCTGTGAATGCGTTCGACGAAGCGGTTGAAGGCGTTGCCGA > 2:320058/1‑103 CGAGCAGGTCAACGAAGTGGCCCTGCTCGGTGGCTGAGGACACTTCGCGAATGCTGCTGTGAATGCGTTCGACGAAGCGGTTGAAGGCGTTGCCGAGGACACCGAATTCGTCGTGGCTGTGGATGTGCAGGCGCTTGGTCAGGTCGCCC > 1:1595485/1‑149 CGAGCAGGTCAACGAAGTGGCCCTGCTCGGTGGCTGAGGACACTTCGCGAATGCTGCTGTGAATGCGTTCGACGAAGCGGTTGAAGGCGTTGCCGAGGACACCGAATTCGTCGTGGCTGTGGATGTGCAGGCGCTTGGTCAGGTCGCCC < 2:1595485/149‑1 GGGCGACCTGACCAAGCGCCTGCACATCCACAGCCACGACGAATTCGGTGTCCTCGGCAACGCCTTCAACCGCTTCGTCGAACGCATTCACAGCAGCATTCGCGAAGTGTCCTCAGCCACCGAGCAGGTCAACGAAGTGGCCCTGC‑GGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1561194‑1561044‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgGCTGAGGACACTTCGCGAATGCTGCTGTGAATGCGTTCGACGAAGCGGTTGAAGGCGTTGCCGAGGACACCGAATTCGTCGTGGCTGTGGATGTGCAGGCGCTTGGTCAGGTCGCCC > NC_002947/1561078‑1561194 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |