New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1570468	38 (0.430)	4 (0.060)	4/196	NT	10.7%	intergenic (+34/‑154)	pcaF‑I/pcaT	beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease
	?	NC_002947	= 1570494	37 (0.530)					intergenic (+60/‑128)	pcaF‑I/pcaT	beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease

CCACCCCCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1570296‑1570468 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcggggaagcccgctccCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTCTTCTCCAGCT  <  NC_002947/1570494‑1570346                                                                                                                                                                                                                                                                                                                                    CCACCCCCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGACCCCAGTCACAGAATGCGATGTTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGC                                                                                                                                                                              >  1:1112558/1‑150 CCACCCCCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCAGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGC                                                                                                                                                                              <  1:1974753/150‑1  CACCCCCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCC                                                                                                                                                                             <  1:436924/150‑1   ACCCCCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCT                                                                                                                                                                            <  2:1458693/150‑1    CCCCCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTC                                                                                                                                                                           <  2:1269226/150‑1       CCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTC                                                                                                                                                                        <  1:441000/150‑1         TGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGC                                                                                                                                                                      >  1:2327010/1‑150           GGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCGCCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGG                                                                                                                                                                    <  2:1099642/150‑1           GGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGG                                                                                                                                                                    <  2:2327010/150‑1           GGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGG                                                                                                                                                                    <  2:784809/150‑1           GGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGG                                                                                                                                                                    <  2:864126/150‑1           GGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGG                                                                                                                                                                    <  1:681870/150‑1               TGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAA                                                                                                                                                                <  1:25666/150‑1                   CGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCC                                                                                                                                                            <  1:1467929/150‑1                    GGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCG                                                                                                                                                           <  2:1796427/150‑1                    GGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCG                                                                                                                                                           <  1:1176030/150‑1                                        TGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGG                                                                                                                                                                    <  2:39069/121‑1                                        TGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGG                                                                                                                                                                    >  1:39069/1‑121                                                ACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGC                                                                                                                                                                              >  2:1140330/1‑103                                                ACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGC                                                                                                                                                                              <  1:1140330/103‑1                                                        GAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCA                                                                                                                                                     >  1:1202446/1‑120                                                        GAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCA                                                                                                                                                     <  2:1202446/120‑1                                                         AGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGG                                                                                                                      <  2:1112558/150‑1                                                          GAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGC                                                                                                                                                              >  1:1995242/1‑109                                                          GAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGC                                                                                                                                                              <  2:1995242/109‑1                                                            AGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCT                                                                                                                   <  1:1470095/150‑1                                                                          AAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGC                                                                                                                                                                              >  1:199296/1‑77                                                                          AAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGC                                                                                                                                                                              <  2:199296/77‑1                                                                                                  GGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGA                                                                                                                          >  1:1399074/1‑105                                                                                                  GGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGA                                                                                                                          <  2:1399074/105‑1                                                                                                                                                     GCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAATTCGGCCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCT                          >  1:614740/1‑150                                                                                                                                                        TCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGC                       >  2:694132/1‑150                                                                                                                                                        TCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGAGCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGACGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGC                       >  1:2224666/1‑150                                                                                                                                                             GCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACAC                                                  >  2:655455/1‑118                                                                                                                                                             GCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACAC                                                  <  1:655455/118‑1                                                                                                                                                               GGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTG                                                          <  1:295652/108‑1                                                                                                                                                               GGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTG                                                          >  2:295652/1‑108                                                                                                                                                                GGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCG                                                                              >  1:362285/1‑87                                                                                                                                                                GGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCG                                                                              <  2:362285/87‑1                                                                                                                                                                   AAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCTGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTC            >  2:521866/1‑150                                                                                                                                                                      CCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCTACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTCTTC         >  1:1195165/1‑150                                                                                                                                                                      CCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTCTTC         <  2:952672/150‑1                                                                                                                                                                       CCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTCTTCT        >  2:844223/1‑150                                                                                                                                                                       CCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTCTTCT        >  2:844690/1‑150                                                                                                                                                                       CCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCAACCGCCACTCTTCT        >  2:243428/1‑150                                                                                                                                                                       CCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCC                                 >  2:936770/1‑125                                                                                                                                                                       CCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCC                                 <  1:936770/125‑1                                                                                                                                                                          CTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGC                                                                         <  2:75433/82‑1                                                                                                                                                                          CTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGC                                                                         >  1:75433/1‑82                                                                                                                                                                             CCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTCTTCTCCAGCT  >  2:452451/1‑150                                                                                                                                                                                                                                                                                                                                    CCACCCCCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1570296‑1570468 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcggggaagcccgctccCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTCTTCTCCAGCT  <  NC_002947/1570494‑1570346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.