New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1707231 =	72 (0.820)	4 (0.050)	4/238	NT	5.5%	intergenic (+7/+135)	PP_1501/PP_1502	hypothetical protein/OmpA family protein
	?	NC_002947	1707251 =	69 (0.820)					intergenic (+27/+115)	PP_1501/PP_1502	hypothetical protein/OmpA family protein

CCAGGTTCAGCGCTAAGGCTGGCTAGCTGAAAGGACAAGCCCCGCGATCGACGCGGGGCTTTTCTTTGTTCGCCGATAATGTTGTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCGCGGGCGCCAAAAATGCTGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1707381‑1707231 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGT  >  NC_002947/1707251‑1707396                                                                                                                                                                                                                                                                                                           CCAGGTTCAGCGCTAAGGCTGGCTAGCTGAAAGGACAAGCCCCGCGATCGACGCGGGGCTTTTCTTTGTTCGCCGATAATGTTGTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCGCGGGCGCCAAAAATGCTGCGC                                                                                                                                                     >  1:881906/1‑150                                                                                                                              CTCGCGGGCGCCAAAAATGCTGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGC                                                                                        >  1:1698703/1‑86                                                                                                                              CTCGCGGGCGCCAAAAATGCTGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGC                                                                                        <  2:1698703/86‑1                                                                                                                               TCGCGGGCGCCAAAAATGCTGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACA                                                                                                            >  1:2319903/1‑65                                                                                                                               TCGCGGGCGCCAAAAATGCTGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACA                                                                                                            <  2:2319903/65‑1                                                                                                                                                    CGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGT  <  1:1024164/150‑1                                                                                                                                                    CGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGT  <  1:802076/150‑1                                                                                                                                                    CGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGT  <  2:1761207/150‑1                                                                                                                                                                                                                                                                                                           CCAGGTTCAGCGCTAAGGCTGGCTAGCTGAAAGGACAAGCCCCGCGATCGACGCGGGGCTTTTCTTTGTTCGCCGATAATGTTGTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCGCGGGCGCCAAAAATGCTGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1707381‑1707231 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGT  >  NC_002947/1707251‑1707396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.