| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1906724 = | 81 (0.920) | 6 (0.090) | 6/196 | NT | 10.2% | intergenic (+22/+106) | nirD/PP_1707 | nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| ? | NC_002947 | 1906818 = | 42 (0.600) | intergenic (+116/+12) | nirD/PP_1707 | nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein | |||||
GGCGAGATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1906898‑1906724‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCGA > NC_002947/1906818‑1906966 GGCGAGATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAG < 1:1040005/150‑1 GATGGTGGTGGCCAGCCTGGTCGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTTGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCCGATTCCGTAGGAGCG < 2:1202637/150‑1 GGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACGAGGCGGTGCAGATTCCGTAGGAGCGGGC > 1:1109859/1‑150 GGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCAGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGC > 1:1540346/1‑150 TGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCTGGCCCTCGTGATCTAGGCTGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTT < 1:524590/150‑1 GGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCCCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCC > 1:2054542/1‑150 GCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAA < 1:1470430/150‑1 GCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAA < 2:2151068/150‑1 TGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAG < 2:240748/150‑1 TGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAG < 1:1833532/150‑1 TGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAG > 2:1629294/1‑150 TCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAG > 2:1006363/1‑81 TCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAG < 1:1006363/81‑1 GCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCG > 1:1179476/1‑77 GCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCG < 2:1179476/77‑1 CTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGG > 1:75335/1‑150 AAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCG > 2:230250/1‑111 AAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCG < 1:230250/111‑1 CGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTG < 2:380748/138‑1 CGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTG > 1:380748/1‑138 CCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCAACCAGGCTGGCCCCCACCATCTCTCC > 2:135178/1‑150 GAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTT < 1:2101765/150‑1 CGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCA < 1:455893/150‑1 tttcgTGCCCGCGAAGAGGCCAGAACAAGCCGACTAGATTACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAG < 2:383803/145‑1 GGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAG > 1:1639663/1‑150 gGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTA < 1:266002/149‑1 GCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTAC < 2:524590/150‑1 CCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACAT > 2:1496997/1‑150 CCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACAT > 1:2087395/1‑150 CCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACAT > 2:465136/1‑150 CCGCGAAGAGGCCAGCAACAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGCCCGGCCACCACCATCTCGCCCATGCGCGGGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACAT < 1:271468/150‑1 GAAGAGGTCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTC < 1:1900526/150‑1 GAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTC < 1:135178/150‑1 AGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGC < 2:1040005/150‑1 CAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTTCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCGA > 1:1892352/1‑150 GGCGAGATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1906898‑1906724‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCGA > NC_002947/1906818‑1906966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |