New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2271256	51 (0.580)	6 (0.080)	5/216	NT	10.6%	intergenic (+34/‑186)	PP_2002/PP_t31	oxidoreductase/tRNA‑Val
	?	NC_002947	= 2271306	57 (0.740)					intergenic (+84/‑136)	PP_2002/PP_t31	oxidoreductase/tRNA‑Val

GCAGGGTAGGGACCGTGGAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2271095‑2271256 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggcctcttcgcggGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAAATG  <  NC_002947/2271306‑2271158                                                                                                                                                                                                                                                                                                                         GCAGGGTAGGGACCGTGGAAGATGTCGCGGCGATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCG                                                                                                                                                                   <  1:1530681/150‑1   AGGGTAGGGACCGTGGAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGC                                                                                                                                                                 <  2:1211393/150‑1   AGGGTAGGGACCGTGGAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGC                                                                                                                                                                 >  1:2304409/1‑150         GGGACCGTGGAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTC                                                                                                                                                           <  2:1946183/150‑1          GGACCGTGGAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCG                                                                                                                                                          <  2:1224031/150‑1               GTGGAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGGT                                                                                                                                                     >  2:1817615/1‑150                            CGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGATAAACACGCTaatc                                                                                                                                        <  2:1844059/150‑5                                                CTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGG                                                                                                                                                       <  2:323796/115‑1                                                CTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGG                                                                                                                                                       >  1:323796/1‑115                                                         CAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAGTCGGACATTAACCGTTG                                                                                                                    <  2:178918/141‑1                                                         CAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAGTCGGACATTAACCGTTG                                                                                                                    >  1:178918/1‑141                                                            GCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTT                                                                                                        <  1:1817615/150‑1                                                                                                                    GATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGG                                                                                                           <  1:2296237/91‑1                                                                                                                    GATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGG                                                                                                           >  2:2296237/1‑91                                                                                                                                                   GCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCT                 <  1:1521136/150‑1                                                                                                                                                    CCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGCAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAGACTCCTG                <  2:1197365/150‑1                                                                                                                                                     CGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGG               >  2:1808225/1‑150                                                                                                                                                     CGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTC                                          <  2:1009846/123‑1                                                                                                                                                     CGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTC                                          >  1:1009846/1‑123                                                                                                                                                      GGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGC              >  2:702119/1‑150                                                                                                                                                       GCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCC             >  2:2318690/1‑150                                                                                                                                                        CCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAG                                                               <  1:627353/99‑1                                                                                                                                                        CCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAG                                                               >  2:627353/1‑99                                                                                                                                                         CTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGG           >  2:51876/1‑150                                                                                                                                                         CTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAAGAGCGGTTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGG           >  1:1572969/1‑150                                                                                                                                                          TCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGT          <  2:1935506/150‑1                                                                                                                                                            TTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGA        <  1:91125/150‑1                                                                                                                                                            TTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGA        <  2:299510/150‑1                                                                                                                                                            TTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGG                                                              <  1:69444/96‑1                                                                                                                                                            TTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGG                                                              >  2:69444/1‑96                                                                                                                                                               GCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAA     >  2:1527089/1‑150                                                                                                                                                                CGGGTAAACCCGCTCCTACAGTCGGACAATAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAAA    <  1:1172137/150‑1                                                                                                                                                                  GGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAAATG  >  1:611025/1‑150                                                                                                                                                                  GGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAAATG  >  1:2060742/1‑150                                                                                                                                                                                                                                                                                                                         GCAGGGTAGGGACCGTGGAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2271095‑2271256 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggcctcttcgcggGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAAATG  <  NC_002947/2271306‑2271158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.