| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2456902 | 81 (0.920) | 7 (0.100) | 8/196 | NT | 8.4% | intergenic (+110/‑71) | gapB/PP_2150 | glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein |
| ? | NC_002947 | = 2456914 | 89 (1.280) | intergenic (+122/‑59) | gapB/PP_2150 | glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein | |||||
AGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2456734‑2456902‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacaggGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAAGCGAATCAGCGTGGAAACGCTGGCGGGTTCAC < NC_002947/2456914‑2456766 AGGTGGTTCGTGTGATGGAAGCCATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGG < 2:860747/150‑1AGGTGGTTCGGGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGG < 2:2315406/150‑1 GGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGG < 2:359694/150‑1 GTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGT > 2:422068/1‑150 GTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGT > 2:1754157/1‑150 GTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGT > 2:1424221/1‑150 TGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTA < 2:47621/150‑1 TCGTGTGATGGAAGACATGGCTGGTGTGAACTCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACC < 1:1679741/150‑1 GATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTT > 2:2284798/1‑132 GATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTT < 1:2284798/132‑1 AAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAG < 1:694189/150‑1 CAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGC > 2:1149621/1‑150 CAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGC < 1:422068/150‑1 AGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGG < 1:1976894/126‑1 AGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGG > 2:1976894/1‑126 CGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTC < 2:1689297/109‑1 CGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTC > 1:1689297/1‑109 GCTGATTCGCTTGTAAGGCAATGAAAAACCGGGAACCTTCGGGTTCCCGTTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTA < 1:1898538/112‑1 GCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTA > 2:1898538/1‑112 ATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGG < 1:261251/92‑1 ATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGG > 2:261251/1‑92 AAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGC < 1:323481/113‑1 AAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGC > 2:323481/1‑113 AAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAG > 2:478704/1‑89 AAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAG < 1:478704/89‑1 CGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACA < 2:1806652/84‑1 CGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGACCTTTCGCGGGTAAACCCGCTCCTACA > 1:1806652/1‑84 G‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTA > 1:1046037/1‑85 G‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTA < 2:1046037/85‑1 CGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAA > 1:1149621/1‑150 TTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAAGCGAAT > 2:1530592/1‑150 TTCGCGGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTt > 2:1158626/1‑130 TTCGCGGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTt < 1:1158626/131‑2 GCGGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAAGCGAATCAGC > 2:468300/1‑150 GCGGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGA > 2:787390/1‑75 GCGGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGA < 1:787390/75‑1 GCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAAGCGAATCAGC < 1:1530592/150‑1 GGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAAGCGAATCAGCGT > 2:2233110/1‑150 GTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAATGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAAGCGAATCAGCGTGG > 1:1658840/1‑150 GTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTAC < 1:1436017/134‑1 GTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTAC > 2:1436017/1‑134 ACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAAGCGAATCAGCGTGGAAAC > 2:1826697/1‑150 CCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAAGCGAATCCGCGTGGAAACG > 1:1266068/1‑150 CCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAAGCGAATCAGCGTGGAAACG > 2:702373/1‑150 CCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCACGAAAGGCCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAACGTTCCCGTTTTTTCATTACCTTACAAGCGAATCAGCGTGGAAACG > 1:620096/1‑150 CCCGCTCCTACAGGGGCAGCGATAACCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCTTCGGGTTCCCGTTTTTT < 2:249123/118‑1 CCCGCTCCTACAGGGGCAGCGATAACCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCTTCGGGTTCCCGTTTTTT > 1:249123/1‑118 CCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAAGCGAATCAGCGTGGAAACGC > 1:1040565/1‑150 CCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGG < 1:439842/94‑1 CCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGG > 2:439842/1‑94 CGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAAGCGAA < 2:2279092/134‑1 CGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAAGCGAA > 1:2279092/1‑134 CTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAAGCGAATCAGCGTGGAAACGCTGGCGG < 1:2233110/150‑1 CTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAAGCGAATCAACGTGGAAACGCTGGCGG > 1:2055375/1‑150 TACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCACGTGTTTTCATTGCCTTACAAGCGAATCAGCGTGGAAACGCTGGCGGG > 1:1424221/1‑150 GGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAATGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAAGCGAATCAGCGTGGAAACGCTGGCGGGTTCAC < 2:1658840/150‑1 AGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2456734‑2456902‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacaggGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACACACATTCAGAATAAAAAAAAACGGGAACCCGAAGGTTCCCGTTTTTTCATTGCCTTACAAGCGAATCAGCGTGGAAACGCTGGCGGGTTCAC < NC_002947/2456914‑2456766 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |