New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2664051 = | 49 (0.560) | 6 (0.080) | 5/200 | NT | 13.9% | intergenic (+33/‑130) | prpC/acnA‑II | methylcitrate synthase/aconitate hydratase |
? | NC_002947 | 2664132 = | 35 (0.490) | intergenic (+114/‑49) | prpC/acnA‑II | methylcitrate synthase/aconitate hydratase |
CAGGTCGGTGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2664222‑2664051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGCT > NC_002947/2664132‑2664280 CAGGTCGGTGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGC > 2:1958517/1‑150 AGGTCGGTGCCTGGCAGGTGCTTGCGGTATGCAGTGTACATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCAAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCA > 1:1893063/1‑150 TGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTGAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG < 1:408172/150‑1 TGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG < 1:1958517/150‑1 GCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGG < 1:1478545/150‑1 TGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGCTTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGC > 1:871184/1‑138 TGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCAC > 2:808801/1‑150 TGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGC < 2:871184/138‑1 CAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCC < 1:1662943/150‑1 AGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCC > 2:1330542/1‑150 AGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCC > 2:2162606/1‑150 TGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGC > 2:585924/1‑126 TGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGC < 1:585924/126‑1 CATGGAATCAGGCTCGTTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTTCACAGTGGTTACAAGGCCGGGTGCATTCGC > 1:1156400/1‑114 CATGGAATCAGGCTCGTTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTTCACAGTGGTTACAAGGCCGGGTGCATTCGC < 2:1156400/114‑1 AATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG > 2:669667/1‑111 AATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG < 1:669667/111‑1 GCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCG > 1:1851187/1‑58 GCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCG < 2:1851187/58‑1 CCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCAT < 1:1698421/115‑1 CCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCAT > 2:1698421/1‑115 CGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCTCAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCAC > 1:2121830/1‑150 CGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCAT < 1:1267841/128‑1 CGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCAT > 2:1267841/1‑128 GAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCTCAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGA < 2:2121830/150‑1 CGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGC < 1:1599342/42‑1 CGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGC > 2:1599342/1‑42 CATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATC > 1:879616/1‑150 CATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATC < 2:1478545/150‑1 TTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAA < 2:525280/150‑1 GCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCC > 1:837667/1‑150 GGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCG > 2:1151246/1‑150 tCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGCACAC‑GTGTGCTCTCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCT < 1:1571544/149‑1 CCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTG < 2:1032715/100‑1 CCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTG > 1:1032715/1‑100 CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGAC > 2:1375264/1‑102 CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGAC < 1:1375264/102‑1 CCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGC > 1:692426/1‑150 CCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGC > 2:2224239/1‑107 CCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGC < 1:2224239/107‑1 CACAGGTACGGTGAAACCTTCCGCCCAACGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGCT < 2:879616/150‑1 CAGGTCGGTGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2664222‑2664051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGCT > NC_002947/2664132‑2664280 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |