| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3117766 = | 89 (1.010) | 6 (0.070) | 6/238 | NT | 6.9% | coding (859/1188 nt) | cfa | cyclopropane‑fatty‑acyl‑phospholipid synthase |
| ? | NC_002947 | 3117801 = | 76 (0.900) | coding (824/1188 nt) | cfa | cyclopropane‑fatty‑acyl‑phospholipid synthase | |||||
ATCGAGATGATCGAAGCGGTCGGTCATCGCTACCTGCCGGTGTATTTCCGCCAGTGTGCTTCGCTGCTCAAGCCTGAAGGCCTGATGCTATTGCAGGCGATCACCATCCGCGACCAGCGCTATGCCCAGGCGCAGCGCTCGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3117910‑3117766‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGCGAAGCACACTGGCGGAAATACACCGGCAGGTAGCGATGACCGACCGCTTCGATCATCTCGATCGAAACCAGTTTGTCGAACGTGCCTTGAAGGTCGCGGTA > NC_002947/3117801‑3117949 ATCGAGATGATCGAAGCGGTCGGTCATCGCTACCTGCCGGTGTATTTCCGCCAGTGTGCTTCGCTGCTCAAGCCTGAAGGCCTGATGCTATTGCAGGCGATCACCATCCGCGACCAGCGCTATGCCCAGGCGCAGCGCTCGGTCGCcttt > 2:766274/1‑146 GTCGGTCATCGCTACCTGCCGGTGTATTTCCGCCAGTGTGCTTCGCTGCTCAAGCCTGAAGGCCTGATGCTATTGCAGGCGATCACCATCCGCGACCAGCGCTATGCCCAGGCGCAGCGCTCG < 1:818024/123‑1 GTCGGTCATCGCTACCTGCCGGTGTATTTCCGCCAGTGTGCTTCGCTGCTCAAGCCTGAAGGCCTGATGCTATTGCAGGCGATCACCATCCGCGACCAGCGCTATGCCCAGGCGCAGCGCTCG > 2:818024/1‑123 GCCAGTGTGCTTCGCTGCTCAAGCCTGAAGGCCTGATGCTATTGCAGGCGATCACCATCCGCGACCAGCGCTATGCCCAGGCGCAGCGCTCGGTC > 1:1899631/1‑95 GCCAGTGTGCTTCGCTGCTCAAGCCTGAAGGCCTGATGCTATTGCAGGCGATCACCATCCGCGACCAGCGCTATGCCCAGGCGCAGCGCTCGGTC < 2:1899631/95‑1 TCCGCGACCAGCGCTATGCCCAGGCGCAGCGCTCGGTCGCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGCGAAGCACACTGGCGGAAATACACCGGCAGGTAGCGATGA < 1:37532/126‑1 TCCGCGACCAGCGCTATGCCCAGGCGCAGCGCTCGGTCGCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGCGAAGCACACTGGCGGAAATACACCGGCAGGTAGCGATGA > 2:37532/1‑126 CCAGCGCTATGCCCAGGCGCAGCGCTCGGTCGCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGC < 1:289224/80‑1 CCAGCGCTATGCCCAGGCGCAGCGCTCGGTCGCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGC > 2:289224/1‑80 AGCGCTATGCCCAGGCGCAGCGCTCGGTCGCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGA > 1:1053908/1‑73 AGCGCTATGCCCAGGCGCAGCGCTCGGTCGCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGA < 2:1053908/73‑1 TCGCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGCGAAGCACACTGGAGGAAATACACCGGCAGGTAGCGATGACCGACCGCTTCGATCATCTCGATCGAAACCAGTTTGTCGAACGTGCCTTGAAGGTCGCGG < 2:1453219/150‑1 GCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGCGAAGCACACTGGCGGAAATACACCGGCAGGTAGCGATGACCGACCGCTTCGATCATCTCGATCGAAACCAGTTTGTCGAACGTGCCTTGAAGGTCGCGGTA > 1:66730/1‑150 ATCGAGATGATCGAAGCGGTCGGTCATCGCTACCTGCCGGTGTATTTCCGCCAGTGTGCTTCGCTGCTCAAGCCTGAAGGCCTGATGCTATTGCAGGCGATCACCATCCGCGACCAGCGCTATGCCCAGGCGCAGCGCTCGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3117910‑3117766‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGCGAAGCACACTGGCGGAAATACACCGGCAGGTAGCGATGACCGACCGCTTCGATCATCTCGATCGAAACCAGTTTGTCGAACGTGCCTTGAAGGTCGCGGTA > NC_002947/3117801‑3117949 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |