New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3383608 | 72 (0.820) | 8 (0.090) | 8/248 | NT | 11.2% | coding (501/546 nt) | PP_2985 | hypothetical protein |
? | NC_002947 | = 4970504 | 55 (0.620) | intergenic (‑217/+177) | fliC/PP_4379 | flagellin/3‑oxoacyl‑ACP synthase |
CTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3383477‑3383608 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATAAACCGCCCTTAACCCCTTGATTTCTCAGGGCTGGCCCCATGCCAGTAT < NC_002947/4970504‑4970414 CTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAAAAAGAATTTCCTAATTTTTGCATTATCTCGGTGTGACCCCGATGCGGCATTCAccaca > 2:1018919/1‑145 TTGGGCGCGAAGCAGTCTTTGCTGATCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATA > 2:2262301/1‑150 TCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATAAACCGCCCTTAACCCCTTGATTTCTCAG > 1:568880/1‑140 TCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATAAACCGCCCTTAACCCCTTGATTTCTCAG < 2:568880/140‑1 CGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATAAACCGCCCTTAACCCCTTGATTTCTCAGGGCTGGCCCCATTCCA < 2:2262360/150‑1 TAAATACAATAGCTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATAAACCGCCCTTAACCCCTTGATTTCTCAGGGCTGGCCCCATGCCAGTAT < 1:1018919/150‑1 CTAATTTTTGCCTTATCTCGGCATGACCCCGATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATAAACCGCCCTTAACCCCTTGATTTCTCAGGGCTGGCCCCAT < 1:436691/113‑1 CTAATTTTTGCCTTATCTCGGCATGACCCCGATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATAAACCGCCCTTAACCCCTTGATTTCTCAGGGCTGGCCCCAT > 2:436691/1‑113 CTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3383477‑3383608 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATAAACCGCCCTTAACCCCTTGATTTCTCAGGGCTGGCCCCATGCCAGTAT < NC_002947/4970504‑4970414 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |