| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_002947 | 3,866,497 | Δ14 bp | 18.4% | coding (412‑425/1020 nt) | PP_3415 ← | LacI family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3866496 | 98 (1.110) | 20 (0.240) | 19/234 | NT | 18.4% | coding (426/1020 nt) | PP_3415 | LacI family transcriptional regulator |
| ? | NC_002947 | 3866511 = | 85 (1.020) | coding (411/1020 nt) | PP_3415 | LacI family transcriptional regulator | |||||
GCAATGAATGCAAGGCGCTTGCGCCCGCGCTCGATCAGGTGCCGTGCAGCAGCACGCCCGGCCTGATGCTGCGAGAAGCCGACCGACAAAGCCCCTGGCTCGCCATTGAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3866344‑3866496‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcatcGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTC > NC_002947/3866511‑3866657 GCAATGAATGCAAGGCGCTTGCGCCCGCGCTCGATCAGGTGCCGTGCAGCAGCACGCCCGGCCTGATGCTGCGAGAAGCCGACCGACAAAGCCCCTGGCTCGCCATTGAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAcc < 1:672636/150‑3GCAATGAATGCAAGGCGCTTGCGCCCGCGCTCGATCAGGTGCCGTGCAGCAGCACGCCCGGCCTGATGCTGCGAGAAGCCGACCGACAAAGCCCCTGGCTCGCCATTGAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAGC > 1:2131308/1‑150 TGAATGCAAGGCGCTTGCGCCCGCGCTCGATCAGGTGCCGTCCAGCAGCACGCCCGGCCTGATGCTGCGAGAAGCCGACCGACAAAGCCCCTGGCTCGCCATTGAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAGCATCa < 2:1601537/150‑2 CGCTTGCGCCCGCGCTCGATCAGGTGCCGTGCAGCAGCCCGCCCGGCCTGATGCTGCGAGAAGCCGACCGACAAAGCCCCTGGCTCGCCATTGAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAA < 1:382310/150‑1 GCCCGCGCTCGATCAGGTGCCGTGCAGCAGCACGCCCGGCCTGATGCTGCGAGAAGCCGACCGACAAAGCCCCTGGCTCGCCATTGAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTC > 2:828354/1‑150 CCGCGCTCGATCAGGTGCCGTGCAGCACCACGCCCGGCCTGATGCTGCGAGAAGCCGACCGACAAAGCCCCTGGCTCGCCATTGAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAG > 2:718686/1‑150 ATCAGGTGCCGTGCAGCAGCACGCGCGGCCTGATGCTGCGAGAAGCCGACCGACAAAGCCCCTGGCTCGCCATTGAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCC < 1:828354/150‑1 CCGTGCAGCAGCACGCCCGGCCTGATGCTGCGAGAAGCCGACCGACAAAGCCCCTGGCTCGCCATTGAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCT < 2:596048/150‑1 CCNGCCTGATGCTGCGAGAAGCCGACCNACAAAGCCCCTGNCTCGCCNTNGAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATT > 1:1620128/1‑150 ACAAAGCCCCTGGCTCGCCATTGAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAG > 2:916399/1‑149 ACAAAGCCCCTGGCTCGCCATTGAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAG < 1:916399/149‑1 CCCCTGGCTCGCCATTGAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGAAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAA < 2:637399/150‑1 CTCGCCATTGAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGT > 2:2090375/1‑150 TCGCCATTGAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTT < 1:628679/150‑1 GAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCA < 2:1620128/150‑1 CTCCTTGATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCA > 2:2212000/1‑150 TCATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGG < 1:2244548/120‑1 TCATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGG > 2:2244548/1‑120 ATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGC > 1:1173274/1‑81 ATGTGCACACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGC < 2:1173274/81‑1 ACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAG > 1:1588983/1‑150 ACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAG > 2:1985885/1‑142 ACACGGCACGCCGCTGGCAACCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAG < 1:1985885/142‑1 AGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGC < 1:1260094/150‑1 GCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATT < 2:1897480/59‑1 GCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATT > 1:1897480/1‑59 GCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAAATGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCC > 2:1171868/1‑150 ATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTC < 1:1136465/150‑1 GCAATGAATGCAAGGCGCTTGCGCCCGCGCTCGATCAGGTGCCGTGCAGCAGCACGCCCGGCCTGATGCTGCGAGAAGCCGACCGACAAAGCCCCTGGCTCGCCATTGAGCTCCATCATGTGCACACACGGCACGCCGCTGGCAACCAGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3866344‑3866496‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcatcGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTC > NC_002947/3866511‑3866657 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |