New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4340085 =	38 (0.430)	12 (0.190)	8/180	NT	42.5%	intergenic (+26/‑305)	ribAB‑II/PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
	?	NC_002947	4340169 =	5 (0.080)					intergenic (+110/‑221)	ribAB‑II/PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein

CTCAAGGTCTACGGGATATCATATTATGGTATTCCAAGATTTTGGCAAGAGGTATGGGGCGACCGGCCATCACTCCGCCCTGTCAAAAGCACCAAGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4340263‑4340085 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcattcgcgggtaaacccgctcctacagggcccTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTACAATTAAAAACGGCCACCAGAACACTTTGTTTTAGC  >  NC_002947/4340169‑4340317                                                                                                                                                                                                                                                                                                                                          CTCAAGGTCTACGGGATATCATATTATGGTATTCCAAGATTTTGGCAAGAGGTATGGGGCGACCGGCCATCACTCCGCCCTGTCAAAAGCACCAAGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCAT                                                                                                                                                                                    <  2:308262/150‑1     AGGTCTACGGGATATCATATTATGGTATTCCAAGATTTTGGCAAGAGGTATGGGGCGACCGGCCATCACTCCGCCCTGTCAAAAGCACCAAGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGC                                                                                                                                                                                <  2:2215497/150‑1       GTCTACGGGATATCATATTATGGTATTCCAAGATTTTGGCAAGAGGTATGGGGCGACCGGCCATCACTCCGCCCTGTCAAAAGCACCAAGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGG                                                                                                                                                                              <  2:6797/150‑1       GTCTACGGGATATCATATTATGGTATTCCAAGATTTTGGCAAGAGGTATGGGGCGACCGGCCATCACTCAGCCCTGTCAAAAGCACCAAGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGG                                                                                                                                                                              <  2:2212239/150‑1            CGGGATATCATATTATGGTATTCCAAGATTTTGGCAAGAGGTATGGGGCGACCGGCCATCACTCCGCCCTGTCAAAAGCACCAAGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAA                                                                                                                                                                         <  1:223408/150‑1                 TATCATATTATGGTATTCCAAGATTTTGGCAAGAGGTATGGGGCGACCGGCCATCACTCCGCCCTGTCAAAAGCACCAAGGGCCCTGTAGGAGCGGGTTTACCCGCGCATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGC                                                                                                                                                                    <  2:1552439/150‑1                                    AAGATTTTGGCAAGAGGTATGGGGCGACCGGCCATCACTCCGCCCTGTCAAAAGCACCAAGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCG                                                                                                                                                                               >  2:1792346/1‑120                                    AAGATTTTGGCAAGAGGTATGGGGCGACCGGCCATCACTCCGCCCTGTCAAAAGCACCAAGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCG                                                                                                                                                                               <  1:1792346/120‑1                                                    GTATGGGGCGACCGGCCATCACTCCGCCCTGTCAAAAGCACCAAGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGG                                                                                                                                                                              >  1:817862/1‑105                                                    GTATGGGGCGACCGGCCATCACTCCGCCCTGTCAAAAGCACCAAGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGG                                                                                                                                                                              <  2:817862/105‑1                                                                  GCCATCACTCCGCCCTGTCAAAAGCACCAAGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAAC                                                                                                                                                                        >  2:1300080/1‑97                                                                  GCCATCACTCCGCCCTGTCAAAAGCACCAAGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAAC                                                                                                                                                                        <  1:1300080/97‑1                                                                                                 GGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGG                                                                                                                                                                              >  1:1998889/1‑60                                                                                                 GGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGG                                                                                                                                                                              <  2:1998889/60‑1                                                                                                                 GTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAG                                                                                                                                       >  1:442152/1‑83                                                                                                                 GTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAG                                                                                                                                       <  2:442152/83‑1                                                                                                                       CCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGAC                                                              >  1:2069145/1‑150                                                                                                                       CCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCC                                                                     >  2:668461/1‑143                                                                                                                       CCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCC                                                                     <  1:668461/143‑1                                                                                                                       CCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTG                                                                                                     <  1:1125839/111‑1                                                                                                                       CCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTG                                                                                                     >  2:1125839/1‑111                                                                                                                       CCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTT                                                                                                      <  2:2284345/110‑1                                                                                                                       CCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTT                                                                                                      >  1:2284345/1‑110                                                                                                                       CCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACC                                                                                                          >  1:235762/1‑106                                                                                                                       CCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACC                                                                                                          <  2:235762/106‑1                                                                                                                       CCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCC                                                                                                                                                       >  1:1004468/1‑61                                                                                                                       CCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCC                                                                                                                                                       <  2:1004468/61‑1                                                                                                                         GCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCT                                                                                                                                                                   <  1:770814/47‑1                                                                                                                         GCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCT                                                                                                                                                                   >  2:770814/1‑47                                                                                                                             ATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAACCCCGCTCCTACAGGGCCCTTGGTGCTTTTGAGATGGCGGAGTGATGGCCAGTCGCCCCATACCTCTTTCGAAAATCTTAGACTACCATAAAATAATATCCCGTAGGCCTAGAG                                                        >  2:114453/1‑150                                                                                                                                                   GCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCCACAAT                                  >  1:1433477/1‑150                                                                                                                                                      TTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTACAATTAA                               >  1:46525/1‑150                                                                                                                                                          CGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGTAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTACAATTAAAAAC                           <  1:2222916/150‑1                                                                                                                                                          CGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTACAATTAAAAAC                           <  1:1084691/150‑1                                                                                                                                                           GGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTACAATTAAAAACG                          <  1:308262/150‑1                                                                                                                                                           GGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATACCGTAGACATTGAGTCTGCAGCAGAACACCTACAATCAAAAACt                          >  2:1084691/1‑149                                                                                                                                                                   CCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGAT                                                                         >  1:300730/1‑95                                                                                                                                                                   CCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGAT                                                                         <  2:300730/95‑1                                                                                                                                                                   CCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGAAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGCCCTTGAGTCTGCAGGCCGGCACCTACGATTAAAAACGGCCCCCAG                  >  1:134401/1‑150                                                                                                                                                                     GCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTACAATTAAAAACGGCCACCAGAA                >  1:1619302/1‑150                                                                                                                                                                           ACAGGGCCCTTGGTGCTTTTGACAGGGCTGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTACAATTAAAAACGGCCACCAGAACACTTT          <  1:2212239/150‑1                                                                                                                                                                           ACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTG                                                    >  2:937547/1‑108                                                                                                                                                                           ACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTG                                                    <  1:937547/108‑1                                                                                                                                                                             AGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCT                                                     <  2:27731/105‑1                                                                                                                                                                             AGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCT                                                     >  1:27731/1‑105                                                                                                                                                                               GGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTACAATTAAAAACGGCCACCAGAACACTTTGTTT      <  2:223408/150‑1                                                                                                                                                                               GGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTACAATTAAAAAC                           <  2:1150869/129‑1                                                                                                                                                                               GGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTACAATTAAAAAC                           >  1:1150869/1‑129                                                                                                                                                                                 CCCTTGGTGCTTTTGACAGGGCGGCGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATATTGCAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTACAATTAAAAACGGCCACCAGAACACTTTGTTTTA    <  1:114453/150‑1                                                                                                                                                                                   CTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTACAATTAAAAACGGCCACCAGAACACTTTGTTTTAGC  >  2:816269/1‑150                                                                                                                                                                                                                                                                                                                                          CTCAAGGTCTACGGGATATCATATTATGGTATTCCAAGATTTTGGCAAGAGGTATGGGGCGACCGGCCATCACTCCGCCCTGTCAAAAGCACCAAGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4340263‑4340085 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcattcgcgggtaaacccgctcctacagggcccTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTACAATTAAAAACGGCCACCAGAACACTTTGTTTTAGC  >  NC_002947/4340169‑4340317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.