New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5164675	112 (1.270)	6 (0.070)	6/240	NT	5.4%	coding (3253/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	NC_002947	= 5164699	100 (1.170)					coding (3229/3906 nt)	hrpA	ATP‑dependent helicase HrpA

CAAGGCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5164523‑5164675 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagCAAC‑TGGCCGAGCCGGCCAAGTTCCTGCGCGGCAAGCTGCCGGGGCTGACCGAGCTGGGCCTGCTGTACCGTGAAATGGGGCGGGTAGAAGCGCTGGTCGAAGACATTCTGCTGGCCAGCCTGGACAGTT  <  NC_002947/5164699‑5164570                                                                                                                                                                                                                                                                                              CAAGGCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCG                                                                                                                                        >  2:1933047/1‑150     GCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCA                                                                                                                                      >  1:1840097/1‑148     GCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCA                                                                                                                                      <  2:1840097/148‑1      CCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCA                                                                                                                                      >  2:951264/1‑147      CCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCA                                                                                                                                      <  1:2121951/147‑1      CCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCA                                                                                                                                      <  1:951264/147‑1      CCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCA                                                                                                                                      >  2:2121951/1‑147                       AACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCA                                                                                                                                      <  1:1532193/130‑1                       AACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCA                                                                                                                                      >  2:1532193/1‑130                             TGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGGAAC‑TGGCCGAGCCGGCCAAGTTCC                                                                                                           <  2:618204/150‑1                                  GCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGCAAC‑TGGCCGAGCCGGCCAAGTTCCTGCGC                                                                                                      <  1:1361279/150‑1                                          GGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCA                                                                                                                                      <  1:1149166/111‑1                                          GGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCA                                                                                                                                      >  2:1149166/1‑111                                                                                                                 AGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGCAAC‑TGGCCGAGCCGGCCAAGTTCCT                                                                                                          <  2:172177/67‑1                                                                                                                 AGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGCAAC‑TGGCCGAGCCGGCCAAGTTCCT                                                                                                          >  1:172177/1‑67                                                                                                                                     CCCCGGCAGCTTGCCGCGCAGGAACTTGGCCGGCTCGGCC‑AGTTGCTGCGCGGCAAGCTGCCGGGGCTGACCGAGCTGGGCCTGCTGTACCGTGAAATGGGGCGGGTAGAAGCGCTGGTCGAAGACATTCTGCTGGCCAGCCTGGACAGT   >  1:1098996/1‑150                                                                                                                                      CCCGGCAGCTTGCCGCGCAGGAACTTGGCCGGCTCGGCC‑AGTTGCTGCGCGGCAAGCTGCCGGGGCTGACCGAGCTGGGCCTGCTGTACCGTGAAATGGGGCGGGTAGAAGCGCTGGTCGAAGACATTCTGCTGGCCAGCCTGGACAGTT  <  2:1098996/150‑1                                                                                                                                                                                                                                                                                              CAAGGCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5164523‑5164675 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagCAAC‑TGGCCGAGCCGGCCAAGTTCCTGCGCGGCAAGCTGCCGGGGCTGACCGAGCTGGGCCTGCTGTACCGTGAAATGGGGCGGGTAGAAGCGCTGGTCGAAGACATTCTGCTGGCCAGCCTGGACAGTT  <  NC_002947/5164699‑5164570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.