New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5342644	69 (0.780)	5 (0.060)	5/228	NT	6.9%	intergenic (+42/‑165)	panC/pgi‑II	pantothenate synthetase/glucose 6‑phosphate isomerase
	?	NC_002947	= 5342666	72 (0.890)					intergenic (+64/‑143)	panC/pgi‑II	pantothenate synthetase/glucose 6‑phosphate isomerase

GCGCCCGGCAGTGATCAATGATCGAGACCTGGTGGTGATTGCGGCGGCTTACCTGGGTAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5342491‑5342644 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagcccgcCCCTACAGGTAAACGTGCAGGAGCGGGCTTGCCCGCGAATGGGCTGCAAGGCAGCCCAAGACCGTTATGCGGTCTTCTCTTCCAAATGCAGGTAGAGGTTGTCGATCAACCGCGTGTTACCCAGGTAAGCCGCCGCAATCACCACCAG  <  NC_002947/5342666‑5342519                                                                                                                                                                                                                                                                                                                GCGCCCGGCAGTGATCAATGATCGAGACCTGGTGGTGATTGCGGCGGCTTACCTGGGTAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGC                                                                                                                                                          >  1:1968379/1‑150                                                                        TCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGAGCAAGCCCGCCCCTACAGGTAAACGTGCAGGAGCGGG                                                                                                                           <  2:837497/110‑1                                                                                       TGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCCCCTACAGGTAAACGTGCAGGAGCGG                                                                                                                            <  1:1256144/94‑1                                                                                       TGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCCCCTACAGGTAAACGTGCAGGAGCGG                                                                                                                            >  2:1256144/1‑94                                                                                               GAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCCCCTACAGGTAAACGTGCAGGAGCGGG                                                                                                                           <  1:883770/87‑1                                                                                               GAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCCCCTACAGGTAAACGTGCAGGAGCGGG                                                                                                                           >  2:883770/1‑87                                                                                                                                                      CCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTCGCGAATGGGCTGCAAGGCAGCCCAAGACCGTTATGCGGTCTTCTCTTCCAAATGCAGGTAGAGGTTGTCGA                                             <  1:837497/110‑1                                                                                                                                                      CCCGCCCCTACAGGTAAACGTGCAGGAGCGGGCTTGCCCGCGAATGGGCTGCAAGGCAGCCCAAGACCGTTATGCGGTCTTCTCTTCCAAATGCAGGTAGAGGTTGTCGATCAACCGCGTGTTACCCAGGTAAGCCGCCGCAATCACCAC     >  2:103687/1‑150                                                                                                                                                        CGCCCCTACAGGTAAACGTGCAGGAGCGGGCTTGCCCGCGAATGGGCTGCAAGGCAGCCCAAGACCGTTATGCGGTCTTCTCTTCCAAATGCAGGTAGAGGTTGTCGATCAACCGCGTGTTACCCAGGTAAGCCGCCGCAATCACCACCA   <  2:2013501/150‑1                                                                                                                                                         GCCCCTACAGGTAAACGGGCAGGTGCGGGCTTGCCCGCGAATGGGCTGCAAGGCAGCCCAAGACCGTTATGCGGTCTTCTCTTCCAAATGCAGGTAGAGGTTGTCGATCAACCGCGTGTTACCCAGGTAAGCCGCCGCAATCACCACCAG  <  1:1622283/150‑1                                                                                                                                                                                                                                                                                                                GCGCCCGGCAGTGATCAATGATCGAGACCTGGTGGTGATTGCGGCGGCTTACCTGGGTAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5342491‑5342644 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagcccgcCCCTACAGGTAAACGTGCAGGAGCGGGCTTGCCCGCGAATGGGCTGCAAGGCAGCCCAAGACCGTTATGCGGTCTTCTCTTCCAAATGCAGGTAGAGGTTGTCGATCAACCGCGTGTTACCCAGGTAAGCCGCCGCAATCACCACCAG  <  NC_002947/5342666‑5342519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.