| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5653009 | 76 (0.860) | 12 (0.160) | 12/206 | NT | 14.4% | intergenic (‑59/+102) | PP_4961/PP_4962 | lipoprotein/hypothetical protein |
| ? | NC_002947 | = 5653023 | 80 (1.090) | intergenic (‑73/+88) | PP_4961/PP_4962 | lipoprotein/hypothetical protein | |||||
GTGTCGCAGACCCAACGGGTCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCCCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5652841‑5653009‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggctcgcccgctcccacagAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCTGGCGACACTGGCAGGATGCTCACTGCTGCAGCCGGCGCAACCGGCC < NC_002947/5653023‑5652876 GTGTCGCAGACCCAACGGGTCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAACGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCG > 2:704582/1‑150 TGTCGCAGACCCAACGGGTCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGG < 2:2218598/150‑1 GTCGCAGACCCAACGGGTCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGG < 2:802169/150‑1 GTCGCAGACCCAACGGGTCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGG < 1:2266454/150‑1 TCGCAGACCCAACGGGTCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCCGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGACTGCTGTGCAGCCCTTCTCGGGa < 2:1562276/150‑2 CAGACCCAACGGGTCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTGGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCG > 2:776836/1‑150 AGACCCAACGGGTCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGC < 2:1266042/150‑1 ACCCAACGGGTCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCC < 1:815957/150‑1 CCAACGGGTCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGC > 2:909526/1‑150 CCAACGGGTCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGC > 2:2237001/1‑150 CAACGGGTCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCT > 1:700876/1‑150 ACGGGTCCAGTTGTCGGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTTAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGCTTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCC < 1:331361/150‑1 GGGTCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCCCA > 2:549981/1‑150 GGTCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCATTCTCGGGCTCGCC < 2:17153/141‑1 GGTCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCATTCTCGGGCTCGCC > 1:17153/1‑141 cCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCCCACAG < 1:1594774/149‑1 TCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTGGCCCGCTCCCACAG > 1:687904/1‑150 GGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCCGCTGTGCGGCCCTTCGCGGGCTCGCCCGCTCCCACAGAGACTGCACTGTAC < 1:2304037/150‑1 GGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCCCACAGAGACTGCACTGTACCTGTGG < 2:1320319/150‑1 TTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCCGCTGTGCGGCCCTTCGCGGGCTCGCCCGCTCCCACAGAGACTGCACTGTACCTGTGGGA < 1:1759977/150‑1 CGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCG < 1:225900/150‑1 GCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGC < 2:436757/106‑1 GCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGC > 1:436757/1‑106 AGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCCGCTGTGCGGCCCTTCGCGGGCTCGCCCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGGG < 1:412723/135‑1 CTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGG > 1:1294851/1‑84 CTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGG < 2:1294851/84‑1 GTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGC > 1:636055/1‑106 GTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGC < 2:636055/106‑1 CTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGGG < 1:1168906/93‑1 CTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGGG > 2:1168906/1‑93 GGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCCCACAGGTACCGTGCAGTCTCTGTGGGAGCGGGCGAGCCCGCGAAGGGCCGCACAGCGGCCCCAAATCGTGGAAACGGAATGAAAGCGCTTTTGGCCGTGACGGCCCTGGCGAC > 1:1298845/1‑150 CCTTCTCGGGCTCGCCCGCTCCCACAGGTACAGTGCAGTCTCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAGTGAAAGCGCTTTTGGCC > 1:2045069/1‑118 CCTTCTCGGGCTCGCCCGCTCCCACAGGTACAGTGCAGTCTCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCC < 2:2045069/118‑1 GGCTCGCCCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCTGGCGACACTGGCAGGATGCTCACTGCTGC > 1:776836/1‑150 TCGCCCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCTGGCGACACTGGCAGGATGCTCACTGCTGCAGC > 1:2237001/1‑150 GCCCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCTGGCGACACTGGCAGGATGCTCACTGCTGCAGCCG > 2:1515661/1‑150 CCCGCTCCCACAGGTACAGTGCAGTCTCTGTGGGAGCGGGCGAGCCCGCGAAGGGCCGCACAGCGGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCTGGCGACACTGGCAGGATGCT < 2:412723/135‑1 CCCGCTCCCACAGAGACTGCACTGTACCTGTTGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCTGGCGACACTGGCAGGATGCTCACTGCTGCAGCCGG > 2:1747416/1‑150 CCCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCTGGCGACACTGGCAGGATGCTCACTGCTGCAGCCGG < 1:562113/150‑1 CCCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCT > 2:1393032/1‑97 CCCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCT < 1:1393032/97‑1 CCCGCTCCCACAGAGACTGCACTGTACCCGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGCGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCACTGGCGACACTCGCAGTGGTCGCACTGCTGCAGCCcg > 2:20545/1‑148 CCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCTGGCGACACTGGCAGGATGCTCACTGCTGCAGCCGGC < 2:2223248/150‑1 CCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCTGGCGACACTGGCAGGATGCTCACTGCTGCAGCCGGC > 2:827083/1‑150 CCACAGAGACTGCACTGTACCTGTGGGAGCGGGGGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCT < 1:523798/108‑1 CCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCTGGCGACACTGGCAGGATGCTCACTGCTGCAGCCGGCGCAACC > 1:1272387/1‑150 CCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCTGGCGACACTGGCAGGATGCTCACTGCTGCAGCCGGCGCAACC > 1:766798/1‑150 CCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCT > 2:523798/1‑108 CCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTT < 1:1055991/93‑1 CCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTT > 2:1055991/1‑93 ACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCTGGCGACACTGGCAGGATGCTCACTGCTGCAGCCGGCGCAACCGG > 1:2139599/1‑150 ACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCTGGCGACACTGGCAGGATGCTCACTGCTGCAGCCGGCGCAACCGG > 2:1989598/1‑150 AGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCTGGCGACACTGGCAGGATGCTCACTGCTGCAGCCGGCGCAACCGGCC < 2:483082/150‑1 GTGTCGCAGACCCAACGGGTCCAGTTGTCTGCCGGGGCCGGTTGCGCCGGCTGCAGCAGTGAGCATCCTGCCAGTGTCGCCAGGGCCGTCACGGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCCCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5652841‑5653009‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggctcgcccgctcccacagAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGAGAAGGGCTGCACAGCAGCCCCAAATCGAGGAAACTGAATGAAAGCGCTTTTGGCCGTGACGGCCCTGGCGACACTGGCAGGATGCTCACTGCTGCAGCCGGCGCAACCGGCC < NC_002947/5653023‑5652876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |