| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5698799 | 65 (0.740) | 9 (0.120) | 8/214 | NT | 13.8% | intergenic (+33/‑134) | hslU/PP_5002 | protease HslVU ATPase subunit/hypothetical protein |
| ? | NC_002947 | = 5698848 | 56 (0.740) | intergenic (+82/‑85) | hslU/PP_5002 | protease HslVU ATPase subunit/hypothetical protein | |||||
GTCGTTCAGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5698640‑5698799‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaagcccgcCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCGGGCTTGCCCGCGAAACTGTCGAAACCGGTCTTACAGAATGTAACGCGACAGGTCTTCGTTCTGTGCCAGCTCACCCAGGTGGCTGTTCACATA < NC_002947/5698848‑5698704 GTCGTTCAGTGCACACCACCTGTCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGG > 2:2322696/1‑150 TTCAGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAA < 2:607662/150‑1 CCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTACGACAGTTTCGC > 1:1178568/1‑118 CCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTACGACAGTTTCGC < 2:1178568/118‑1 CGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGC < 1:779755/124‑1 CGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGC > 2:779755/1‑124 CGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTT < 1:1278649/150‑1 GCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGC > 1:554351/1‑114 GCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGC < 2:554351/114‑1 GCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGC < 1:54807/150‑1 GTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCGGGCTT < 2:1403049/150‑1 AGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCGGGCTTGCCCGCGAAACTGTC > 1:134496/1‑137 AGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCGGGCTTGCCCGCGAAACTGTC < 2:134496/137‑1 GAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTT < 1:1119170/95‑1 GAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTT > 2:1119170/1‑95 CATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCG > 1:1875863/1‑95 CATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCG < 2:1875863/95‑1 GCAAGCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTTGCGCGTGCAGGAGCGGGCTTGCCCGCGAAACTGTCGAAACCGGTCTTACAGAATGTAACGCGACAGGTCTTCGTTCTGTGCCAGCTCACCCAGGTGGCTGTTC > 2:2117562/1‑150 GCAAGCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCGGGCTTGCCCGCGAAACTGTCGAAACCGGTCTTACAGAATGTAACGCGACAGGTCTTCGTTCTGT > 2:1534754/1‑126 GCAAGCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCGGGCTTGCCCGCGAAACTGTCGAAACCGGTCTTACAGAATGTAACGCGACAGGTCTTCGTTCTGT < 1:1534754/126‑1 GCAAGCCCGCCCCCGCACGGAGCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCGGGCTTGCCCGCGAAACTGTCGAAACCGGTCTTACAGAATGTAACGCGACAGGTCTTCGTTCTGTGCCAGCTCACCCAGGTGGCTGTTC > 1:777555/1‑150 GCCCGCCCCCGCACTGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCGGGCTTGCCCGCGAAACTGTCGAAACCGGTCTTACAGAATGTAACGCGACAGGTCTTCGTTCTGTGCCAGCTCACCCAGGTGGCTGTTCACAT < 2:1574768/150‑1 GCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCGGGCTTGCCCGCGAAACTGTCGAAACCGGTCTTACAGAATGTAACGCGACAGGTCTTCGTTCTGTGCCAGCTCACCCAGGTGGCTGTTCACAT > 2:1007684/1‑150 GCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCGGGCTTGCCCGCGAAACTGTCGAAACCGGTCTTACAGAATGTAACGCGACAGGTCTTC > 1:830260/1‑115 GCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCGGGCTTGCCCGCGAAACTGTCGAAACCGGTCTTACAGAATGTAACGCGACAGGTCTTC < 2:830260/115‑1 GCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCGGGCTTGCCCGCGAAACTGTCGAAACCGGTCTTA > 2:229378/1‑91 GCCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCGGGCTTGCCCGCGAAACTGTCGAAACCGGTCTTA < 1:229378/91‑1 CCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCGGGCTTGCCCGCGAAACTGTCGAAACCGGTCTTACAGAATGTAACGCGACAGGTCTTCGTTCTGTGCCAGCTCACCCAGGTGGCTGTTCACATA > 1:828244/1‑150 CCCGCCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGAGGCGCGTGCAGGAGCGGGCTTGCCCGCGAAACTGTCGAAACCGGTCTTACAGAATGTAACGCGACAGGTCTTCGTTCTGTGCCAGCTCACCCAGGTGGCTGTTCACATA > 1:2232149/1‑150 GTCGTTCAGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5698640‑5698799‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaagcccgcCCCCGCACGGATCACCACAGGCCCAAGGGTTGTGGTGGCGCGTGCAGGAGCGGGCTTGCCCGCGAAACTGTCGAAACCGGTCTTACAGAATGTAACGCGACAGGTCTTCGTTCTGTGCCAGCTCACCCAGGTGGCTGTTCACATA < NC_002947/5698848‑5698704 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |