| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5773906 = | 81 (0.920) | 4 (0.050) | 4/232 | NT | 5.1% | coding (413/657 nt) | betI | choline‑responsive transcriptional repressor BetI |
| ? | NC_002947 | 5773970 = | 74 (0.900) | coding (477/657 nt) | betI | choline‑responsive transcriptional repressor BetI | |||||
AGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5774062‑5773906‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcagcCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGC > NC_002947/5773970‑5774118 AGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAAC < 1:872418/150‑1 GTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACT < 2:889027/150‑1 GTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACT < 2:2324925/150‑1 TCCATGTATTTGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGACCTGG < 1:1843462/150‑1 CCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGG < 1:1871105/149‑1 CCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGG > 2:1871105/1‑149 CATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCA > 2:770949/1‑150 TGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGC < 1:1377747/150‑1 TGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGC > 2:227201/1‑150 TGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGC > 1:112869/1‑150 TGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGG > 2:1359811/1‑100 TGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGG < 1:1359811/100‑1 CGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACC > 2:2126628/1‑113 CGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACC < 1:2126628/113‑1 GCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGAC < 1:375645/135‑1 GCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGAC > 2:375645/1‑135 CAGCCCTGATCGACGGTTTTTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATG > 2:191242/1‑150 CAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATG < 1:971588/150‑1 AGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTACTGACAAagg > 2:688054/1‑147 CCCTGATCGACGGTTTGTGGCTGCGGGGCGCCCTGTCGGGGGATTCATGCGACACCGCCCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGC > 1:1220889/1‑150 AGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5774062‑5773906‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcagcCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGC > NC_002947/5773970‑5774118 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |