New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5914240	25 (0.280)	13 (0.190)	10/192	NT	41.7%	intergenic (+76/+77)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	= 5914280	17 (0.250)					intergenic (+116/+37)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase

GTACATCGACATCTTCGTCGCGTGCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5914065‑5914240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccctcttcgcgggcacgcccgctcccACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGACACCGGTCTCAAACAAAAACGCCGCCCTTGAGGGGCGGCGTTTTCGTTTACACGGTATGCAGGTACCAGTTGTACTCGA  <  NC_002947/5914280‑5914133                                                                                                                                                                                                                                                                                                                                       GTACATCGACATCTTCGTCGCGTGCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCG                                                                                                                                                                                 >  1:341059/1‑150      TCGACATCTTCGTCGCGTGCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTC                                                                                                                                                                            >  1:1746457/1‑150      TCGACATCTTCGTCGCGTGCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTC                                                                                                                                                                            >  2:210632/1‑150             CTTCGCCGCGTGAAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGG                                                                                                                                                                     <  1:1020086/150‑1                   CGCGTGCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTGCAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGC                                                                                                                                                               <  2:1514091/150‑1                   CGCGTGCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGC                                                                                                                                                               <  1:1048459/150‑1                   CGCGTGCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGC                                                                                                                                                               <  1:1865973/150‑1                    GCGTGCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCC                                                                                                                                                              <  2:341059/150‑1                       TGCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGC                                                                                                                                                           <  2:1332381/150‑1                        GCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTT                                                                                                                                                                          <  2:1984562/134‑1                        GCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTT                                                                                                                                                                          >  1:1984562/1‑134                         CAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTC                                                                                                                                                         >  1:1857355/1‑150                         CAAGGAAAGCAAGCTCGAAGAGTTCGAGCACTCGATCTCCGCCCCCGAGTACAACTGGTCCCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTC                                                                                                                                                         <  1:502284/150‑1                          AAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCC                                                                                                                                                        >  2:409278/1‑150                                 GCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCC                                                                                                                                                             >  2:894922/1‑138                                 GCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCC                                                                                                                                                             <  1:894922/138‑1                                                              TCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTAC                                                                                                                   >  2:2292032/1‑150                                                                             AACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAGTTCACAGGCTTCAGCCTTCGAAATTACCCTGCGG                                                                                                            >  1:1409745/1‑143                                                                             AACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAGTTCACAGGCTTCAGCCTTCGAAATTACCCTGCGG                                                                                                            <  2:1409745/143‑1                                                                             AACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGC                                                                                                    <  2:41425/150‑1                                                                             AACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGC                                                                                                    <  1:2292032/150‑1                                                                                                 tcAAACAAAAACGCCGCCCTTGAGAGGCGGCGTTTTTGTTTGAGACCGGTGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACA                                                                                                                                        <  2:1052441/92‑1                                                                                                 tcAAACAAAAACGCCGCCCTTGAGAGGCGGCGTTTTTGTTTGAGACCGGTGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACA                                                                                                                                        >  1:1052441/3‑94                                                                                                       GAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGG                                                                                     <  1:167823/139‑1                                                                                                       GAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGG                                                                                     >  2:167823/1‑139                                                                                                                           GCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCG                                                                                                       <  2:1889363/101‑1                                                                                                                           GCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCG                                                                                                       >  1:1889363/1‑101                                                                                                                                             ACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGG                                                                                                            <  2:1727236/78‑1                                                                                                                                             ACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGG                                                                                                            >  1:1727236/1‑78                                                                                                                                                          TCTTCGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTTAGCCTGCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGACACCGGTCTCAAACAAAAACGCCGCCCTTGAGGGGCGGCGTTTTCGTTTACACGGTAT                       >  2:1054816/1‑150                                                                                                                                                          TCTTCGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGACACCGGTCTCAAACAAAAACGCCGCCCTTGAGGGGCGGCGTTTTCGTTTACACGGTAT                       >  2:2096973/1‑150                                                                                                                                                          TCTTCGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGACACCGGTCTCAAACAAAAACGCCGCCCTTGAGGGGCGGC                                          <  2:1070901/131‑1                                                                                                                                                          TCTTCGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGACACCGGTCTCAAACAAAAACGCCGCCCTTGAGGGGCGGC                                          >  1:1070901/1‑131                                                                                                                                                           CTTCGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGACACCGGTCTCAAACAAAAACGCCGCCCTTGAGGGGCGGCGTTTTCGTTTACACGGTATG                      <  1:1365381/150‑1                                                                                                                                                              CGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGG                                                                                                            >  2:1395483/1‑61                                                                                                                                                              CGCGGGCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGG                                                                                                            <  1:1395483/61‑1                                                                                                                                                                   GCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGACACCGGTCTCAAACAAAAACGCCGCCCTTGAG                                                 <  2:1421555/115‑1                                                                                                                                                                   GCACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGACACCGGTCTCAAACAAAAACGCCGCCCTTGAG                                                 >  1:1421555/1‑115                                                                                                                                                                     ACGCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGACACCGGTCTCAAACAAAAACGCCGCCCTTGAGGGGCGGCGTTTTCGTTTACACGGTATGCAGGTACCAG            >  2:999847/1‑150                                                                                                                                                                       GCCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGACACCGGTCTCAAACAAAAACGCCGCACTTGAGGGGCGGCGTTTTCGTTTACACGGTATGCAGGTACCAGTT          >  1:67893/1‑150                                                                                                                                                                        CCCGCTCCCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGACACCGGTCTCAAACAAAAACGCCGCCCTTGAGGGGCGGCGTTTTCGTTTACACGGTATGCAGGTACCAGTTG         <  2:2238315/150‑1                                                                                                                                                                               CCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGACACCGGTCTCAAACAAAAACGCCGCCCTTGAGGGGCGGCGTTTTCGTTTACACGGTATGCAGGTACCAGTTGTACTCGA  >  1:1274299/1‑150                                                                                                                                                                               CCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGACACCGGTCTCAAACAAAAACGCCGCCCTTGAGGGGCGGCGTTTTCGTTTACACGGTATGCAGG                  >  2:1979363/1‑134                                                                                                                                                                               CCACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGACACCGGTCTCAAACAAAAACGCCGCCCTTGAGGGGCGGCGTTTTCGTTTACACGGTATGCAGG                  <  1:1979363/134‑1                                                                                                                                                                                                                                                                                                                                       GTACATCGACATCTTCGTCGCGTGCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5914065‑5914240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccctcttcgcgggcacgcccgctcccACA‑GGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGACACCGGTCTCAAACAAAAACGCCGCCCTTGAGGGGCGGCGTTTTCGTTTACACGGTATGCAGGTACCAGTTGTACTCGA  <  NC_002947/5914280‑5914133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.