New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5919647 =	100 (1.130)	6 (0.070)	6/230	NT	6.4%	coding (177/1674 nt)	PP_5190	type II secretion system protein
	?	NC_002947	5919691 =	83 (1.020)					coding (221/1674 nt)	PP_5190	type II secretion system protein

CCGCGACGATGAGGATGCCGTGGCGCTGGGCGAAGGCTGGGGAGATCAGGCTGGTGACCTGGGGCAGGTCGAGTTGCATGGGGTCGATGCGCAGGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5919804‑5919647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggccgACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAGCGCCCAG  >  NC_002947/5919691‑5919839                                                                                                                                                                                                                                                                                                                     CCGCGACGATGAGGATGCCGTGGCGCTGGGCGAAGGCTGGGGAGATCAGGCTGGTGACCTGGGGCAGGTCGAGTTGCATGGGGTCGATGCGCAGGTAGGGTTGGCCGACCATGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGG                                                                                                                                                               >  1:21364/1‑150  CGCGACGATGAGGATGCCGTGGCGCTGGGCGAAGGCTGGGGAGATCAGGCTGGTGACCTGGGGCAGGTCGAGTTGCATGGGGTCGATGCGCAGGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGG                                                                                                                                                              <  1:280782/150‑1  CGCGACGATGAGGATGCCGTGGCGCTGGGCGAAGGCTGGGGAGATCAGGCTGGTGACCTGGGGCAGGTAGAGTTGCATGGGGTCGATGCGCAGGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGG                                                                                                                                                              <  2:1579009/150‑1    CGACGATGAGGATGCCGTGGCGCTGGGCTAAGGCTGGGGAGATCAGGCTGGTGACCTGGGGCAGGTCGAGTTGCATGGGGTCGATGCGCAGGTAGTGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCT                                                                                                                                                            <  2:1703819/150‑1        GATGAGGATGCCGTGGCGCTGGGCGAAGGCTGGGGAGATCAGGCTGGTGACCTGGGGCAGGTCGAGTTGCATGGGGTCGATGCGCAGGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTGGCC                                                                                                                                                        >  2:2040678/1‑150                                                                        AGTTGCATGGGGTCGATGCGCAGGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTG                                                                                                                                                           >  1:1741718/1‑83                                                                        AGTTGCATGGGGTCGATGCGCAGGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTG                                                                                                                                                           <  2:1741718/83‑1                                                                                              GGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGG                                                                                                                                                              <  2:137790/58‑1                                                                                              GGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGG                                                                                                                                                              >  1:137790/1‑58                                                                                                                       CAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCC                                                                            >  1:3786/1‑115                                                                                                                       CAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCC                                                                            <  2:3786/115‑1                                                                                                                        AGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCG                                        >  1:209904/1‑150                                                                                                                          CCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTGGCCGACAAGGTCGG                                                                                                                                             <  1:288146/47‑1                                                                                                                          CCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTGGCCGACAAGGTCGG                                                                                                                                             >  2:288146/1‑47                                                                                                                                   AAGGTGCTCCAAGTCCAGGGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCC                             <  2:209904/150‑1                                                                                                                                                       GCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAG         >  1:795684/1‑150                                                                                                                                                       GCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAG         >  2:2263764/1‑150                                                                                                                                                       GCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAG         >  2:907808/1‑150                                                                                                                                                        CTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCTGCCGATGCCTCCAGCGTCACCGTCGCCAGC        >  2:552375/1‑150                                                                                                                                                          GGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCA          >  1:585011/1‑146                                                                                                                                                          GGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCA          <  2:585011/146‑1                                                                                                                                                           GCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAGCGCC     <  2:280782/150‑1                                                                                                                                                              GACAAGGGCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAGCGCCCAG  <  1:2063633/150‑1                                                                                                                                                                                                                                                                                                                     CCGCGACGATGAGGATGCCGTGGCGCTGGGCGAAGGCTGGGGAGATCAGGCTGGTGACCTGGGGCAGGTCGAGTTGCATGGGGTCGATGCGCAGGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5919804‑5919647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggccgACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAGCGCCCAG  >  NC_002947/5919691‑5919839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.