| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3968919 = | 27 (0.310) | 10 (0.120) | 8/240 | NT | 14.9% | coding (1003/1179 nt) | PP_3498 | transposase |
| ? | NC_002947 | 3969010 = | 88 (1.030) | coding (1094/1179 nt) | PP_3498 | transposase | |||||
TGTATTCCGCCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAA > NC_002947/3968773‑3969068 | ggtcaatgttcactagcaggggttggagcgcctagcgccccggtggcattacccggttggtcagaggctcatagccgcctccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatacaatccgcaGAtt < 1:134743‑M1/4‑1 (MQ=255) gcgcctagcgccccggtggcattacccggttggtcagaggctcatagccgcctccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcaGATTCCGATCAGCCAGA‑TGATCGCCGCctct < 1:1981719‑M1/31‑1 (MQ=255) attacccggttggtcagaggctcatagccgcctccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcaGATTTCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCtt < 2:1855486‑M1/51‑1 (MQ=255) ggtcagaggctcatagccgcctccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcaGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAagga > 2:1981719‑M1/89‑150 (MQ=255) agaggctcatagccgcctccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcaGATTTCGATTAGCCAGCCTGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAggc > 1:2147869‑M1/85‑150 (MQ=255) ccgcctccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatacaatccgcaGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAggctg > 2:134743‑M1/73‑150 (MQ=255) tccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcaGATTTCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTaa > 1:1855486‑M1/68‑150 (MQ=255) gCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTatat < 2:1506163/150‑1 (MQ=31) gttggtaaacctgatcgctctgtaacagggcccagataatccgcaGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAaggagg < 1:1223781‑M1/64‑1 (MQ=255) gttggtaaacctgatcgctctgtaacagggcccagataatccgcaGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAaggagg > 2:1223781‑M1/46‑109 (MQ=255) cTGGTGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTTTTGCGCTGGCTATCCCGCCTTGGGGGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATgg < 1:227348/150‑1 (MQ=12) tgatgaTCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGCGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATggg > 1:271554/1‑150 (MQ=17) gatgatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGc > 2:136303/1‑150 (MQ=32) gatgatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGc < 1:1903078/150‑1 (MQ=32) atgatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGcc > 2:1020725/1‑150 (MQ=32) atCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTg < 1:132800/150‑1 (MQ=32) aGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGccc > 1:93862/1‑144 (MQ=32) aGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGccc < 2:93862/144‑1 (MQ=32) ggCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACag > 2:1154730/1‑150 (MQ=32) gcgcATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGc < 1:3130/150‑1 (MQ=32) gcATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATg < 1:126921/132‑1 (MQ=32) gcATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATg > 2:126921/1‑132 (MQ=32) gcATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGa > 2:1160828/1‑150 (MQ=32) gcATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGa > 1:2137696/1‑150 (MQ=32) gcATTCCGTCGTTAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGa > 2:1160839/1‑150 (MQ=17) aTTCCGTCTTGACCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATc < 1:204293/150‑1 (MQ=17) ccGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAgg < 1:1261468/150‑1 (MQ=32) aacagggcccatataatccgcaGATTTCGATTAGCCAGCCTGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAgg > 2:291394‑M1/23‑98 (MQ=255) aacagggcccatataatccgcaGATTTCGATTAGCCAGCCTGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAgg < 1:291394‑M1/76‑1 (MQ=255) ttGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTCTCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTa < 1:756175/132‑1 (MQ=18) ttGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTa > 2:756175/1‑132 (MQ=33) ttGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTAc > 1:326216/1‑150 (MQ=32) ccAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACaga > 1:1143547/1‑131 (MQ=33) ccAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACaga < 2:1143547/131‑1 (MQ=33) cTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCaa < 2:893681/149‑1 (MQ=32) cTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCaa > 1:893681/1‑149 (MQ=32) aaGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTAc > 1:670455/1‑139 (MQ=33) aaGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTAc < 2:670455/139‑1 (MQ=33) gCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACaga > 1:993816/1‑122 (MQ=33) gCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACaga < 2:993816/122‑1 (MQ=33) gCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAAc > 1:752507/1‑140 (MQ=33) gCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAAc > 1:752497/1‑140 (MQ=33) gCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAAc < 2:752497/140‑1 (MQ=33) gCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAAc < 2:752507/140‑1 (MQ=33) tGATTCCGATCAGCCGGA‑TGAGCGCGGCCTCTTGCGCTGGCTACCCCGCCTTGGGCGAAAGGGGGGGGCGATAAGGCTGGCTAA‑T‑CGAAATCTGGGGATTATAGGGGCCCTGTTACAGAGCGATCAGGTTTCCCAACGCAACCcgaacgg < 2:1980424/150‑2 (MQ=11) tGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaacga > 1:191486/1‑150 (MQ=32) tGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCA‑‑CAGGTAAAGTGCGTAATCTGCGGGGTATATGGGCCCCGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaacga > 1:1571630/1‑150 (MQ=11) GATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCCTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaacgaa > 1:2046650‑M1/1‑150 (MQ=255) | TGTATTCCGCCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAA > NC_002947/3968773‑3969068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |