| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,010,419 | A→C | 5.3% | L216R (CTG→CGG) | PP_0871 ← | glycine betaine/carnitine/choline ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,010,419 | 0 | A | C | 5.3% | 212.5 / 4.6 | 77 | L216R (CTG→CGG) | PP_0871 | glycine betaine/carnitine/choline ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base A (38/34); new base C (2/2); total (40/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.57e-01 | |||||||||||
GGCCGCGCCCAGCAGCAAGGCGATTCTCTTCTTCATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAGGGCCACACGTACGCCGCCGACGATGATCGGCACGGCGTTGGGC > NC_002947/1010273‑1010568 | ggCCGCGCCCAGCAGCAAGGCGATTCTCTTCTTCATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCcagcagca > 2:1190191/1‑150 (MQ=255)ggCCGCGCCCAGCAGCAAGGCGATTCTCTTCTTCATGCGTTTCCTATCCTTATTGGGCCAGGACACGTTCCCGGCTCCGCCTGCTGGAGAATCTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCcagcagca < 1:1450766/150‑1 (MQ=255) gCCGCGCCCAGCAGCAAGGCGATTCTCTTCTTCATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCTAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCcagcagcag > 1:2120283/1‑150 (MQ=255) gCCGCGCCCAGCAGCAAGGCGATTCTCTTCTTCATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCcagcagcag > 2:524262/1‑150 (MQ=255) cgcgCCCAGCAGCAAGGCGATTCTCTTCTTCATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCt > 1:1044454/1‑150 (MQ=255) ccAGCAGCAAGGCGATTCTCTTCTTCATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGc > 1:1328132/1‑150 (MQ=255) aaGGCGATTGTCTTCTTCATGCGTTTGCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCATGCGGCCCCCAGCAGCAGCTGCGGCTGgttgtt < 2:244049/150‑1 (MQ=255) aGGCGATTCTCTTCTTCATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTc < 1:1190191/150‑1 (MQ=255) ggCGATTCTCTTCTTCATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCa > 1:621085/1‑150 (MQ=255) cGATTCTCTTCTTCATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCTAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAgg < 2:2120283/150‑1 (MQ=255) cGATTCTCTTCTTCATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAgg < 2:1328132/150‑1 (MQ=255) cGATTCTCTTCTTCATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAgg < 2:621085/150‑1 (MQ=255) aTTCTCTTCTTCATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGc < 1:1314552/150‑1 (MQ=255) aTTCTCTTCTTCATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGc > 1:1127266/1‑150 (MQ=255) ttcttcATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCCGCAGCTGCTGCTgggggcc > 1:492103/1‑133 (MQ=255) ttcttcATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCCGCAGCTGCTGCTgggggcc < 2:492103/138‑6 (MQ=255) tcttcATGCGTTTCCTATCCTTTTTGGGACAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCg < 1:2269879/150‑1 (MQ=255) tcttcATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCg > 1:329281/1‑150 (MQ=255) cttcATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCgg < 2:1044454/150‑1 (MQ=255) tGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGTCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAg > 1:146054/1‑150 (MQ=255) gCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGa > 1:1587992/1‑150 (MQ=255) tCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAgg < 2:1038500/150‑1 (MQ=255) tCCTATCCTTATTGGGCCACGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGTCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCTATGCCGGGGAAGATCAgg < 2:924014/150‑1 (MQ=255) ttATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAg > 1:1261138/1‑150 (MQ=255) ttATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCAGTCCATGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTCCCGGGCGATGACGGGGAAGATGAGGCTG‑ccccg > 1:1677585/1‑148 (MQ=255) aTTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGc > 1:1280136/1‑150 (MQ=255) ggccaggccaCGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCACTTCTGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGtt > 1:156699/1‑150 (MQ=255) ccaCGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCg > 1:2248690/1‑150 (MQ=255) caCGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGa > 2:1539951/1‑150 (MQ=255) tttctCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAgg > 1:728636/5‑127 (MQ=255) tttctCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAgg < 2:728636/123‑1 (MQ=255) ttCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCgctggc > 2:801527/1‑145 (MQ=255) ttCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGAATGAGTGGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAg > 1:1874019/1‑150 (MQ=255) agccagcGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCCGCAGCTGCTGCTgggg > 2:763456/1‑90 (MQ=255) agccagcGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCCGCAGCTGCTGCTgggg < 1:763456/92‑3 (MQ=255) ccagcGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGc > 2:1370266/1‑150 (MQ=255) ccagcGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGc < 2:146054/150‑1 (MQ=255) gcgcCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAg > 1:1167147/1‑150 (MQ=255) ctgctgGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAgcggt < 2:2042909/150‑1 (MQ=255) tgctgGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCCGGAGT‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAgcggtg > 1:21794/1‑150 (MQ=255) ctgGAGAACCGCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCATGCGGTCCCCAGCGGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAgcggtgcg < 1:524262/150‑1 (MQ=255) ctgGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATc > 2:1481648/1‑105 (MQ=255) ctgGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATc < 1:1481648/105‑1 (MQ=255) tgGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGtt < 2:1196160/121‑1 (MQ=255) tgGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGtt > 1:1196160/1‑121 (MQ=255) ggAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAgcggtgcggt < 2:111183/150‑1 (MQ=255) gagaAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGcggtgcggtg > 2:1533130/1‑150 (MQ=255) tCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGt > 1:684277/1‑150 (MQ=255) tCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGt < 2:684277/150‑1 (MQ=255) tCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGt > 1:1536709/1‑150 (MQ=255) tCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGt < 1:1201942/150‑1 (MQ=255) ccgccgCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCa < 1:1370266/150‑1 (MQ=255) ccgccgCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCa < 2:1280136/150‑1 (MQ=255) cgccgcGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAg > 1:1662652/1‑150 (MQ=255) gccgcGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCggtgcggtgc < 1:455763/139‑1 (MQ=255) gccgcGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCggtgcggtgc > 2:455763/1‑139 (MQ=255) gccgcGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAgc < 2:2116170/150‑1 (MQ=255) gccgcGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAgc < 2:1127266/150‑1 (MQ=255) gTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAg < 2:1261138/150‑1 (MQ=255) tCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑ACCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAgg < 2:329281/150‑1 (MQ=255) cAGTACCAGTGCCAGTAGCGCGGTGAAGGCGACACCCAGCAGCAGCTGCTGCTGGGGGTTCAGGGCGATGCC‑GGGACGGGGAGGGAGTGGTTGGCATGGGGCACCGATCAGGAACGCCAGCGGTGCGGTGAACAAGTTCAGCGCCAGGGc > 1:1113548/1‑150 (MQ=255) aGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAGGGcc > 2:1274532/1‑150 (MQ=255) aGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAGGGcc > 2:247381/1‑150 (MQ=255) tACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAGGGCcac < 2:1587992/150‑1 (MQ=255) tACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAGGGCcac > 1:1550672/1‑150 (MQ=255) cAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATc < 2:2193888/103‑1 (MQ=255) cAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATc > 1:2193888/1‑103 (MQ=255) ccAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGtt > 2:1720289/1‑88 (MQ=255) ccAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGtt < 1:1720289/88‑1 (MQ=255) tAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAgg < 2:663741/133‑1 (MQ=255) tAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAgg > 1:663741/1‑133 (MQ=255) gcgcGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAGGGCCACACGTACGCCGCcga < 1:1539951/150‑1 (MQ=255) gcgcGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGGGCGGTGCCCACGTTCAGCGCCAGGGCCACACGTACGCCGCcga < 2:156699/150‑1 (MQ=255) aGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAGGGCCacac < 1:1318847/129‑1 (MQ=255) aGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAGGGCCacac > 2:1318847/1‑129 (MQ=255) gcggcCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGTAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAGGGCCACACGTACGCCGCCGACGATGATCGGc > 2:1772869/1‑150 (MQ=255) cggcCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAGCGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAGGGCCACACGTACGCCGCAGAcgacgagtttca < 2:1677585/150‑7 (MQ=255) ggcCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCAc < 1:751113/105‑1 (MQ=255) ggcCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCAc > 2:751113/1‑105 (MQ=255) cccAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAGGGCCACACGTACGCCGCCGACGATGATCGGCACGGCg > 1:596572/1‑150 (MQ=255) cccAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAGGGCCACACGTACGCCGCCGACGATGATCGGCACGGCg > 2:2192670/1‑150 (MQ=255) gcagcagcTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAGGGCCACACGTACGCCGCCGACGATGATCGGCACGGCGTTgg < 1:247381/150‑1 (MQ=255) cagcagcTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAGGGCCACACGTACGCCGCCGACGATGATCGGCACGGCGTTggg < 1:180749/150‑1 (MQ=255) agcagcTGCGGCTGGTTGTTCAGGGCGCTGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAGGGCCACACGTACGCCGCCGACGATGATCGGAACGGCGTTggac > 1:324553/1‑148 (MQ=255) | GGCCGCGCCCAGCAGCAAGGCGATTCTCTTCTTCATGCGTTTCCTATCCTTATTGGGCCAGGCCACGTTCCAGCCAGCGCCTGCTGGAGAAACTCACCGCCGCGTCCAGTACCAGTGCCAGTAGCGCGGTGCAGGCGGCCCCCAGCAGCAGCTGCGGCTGGTTGTTCAGGGCGATGCCGGGGAAGATCAGGCTG‑CCCAGGCTGTTGGCACCGATCAGGAACGCCAGCGGTGCGGTGCCCACGTTCAGCGCCAGGGCCACACGTACGCCGCCGACGATGATCGGCACGGCGTTGGGC > NC_002947/1010273‑1010568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |