| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,019,126 | C→A | 6.1% | L120M (CTG→ATG) | PP_1797 → | HlyD family secretion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,019,126 | 0 | C | A | 6.1% | 355.6 / 5.9 | 113 | L120M (CTG→ATG) | PP_1797 | HlyD family secretion protein |
| Reads supporting (aligned to +/- strand): ref base C (55/50); new base A (4/3); total (59/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.27e-01 | |||||||||||
Only 100 of 117 total aligned reads displayed.
GGCATCGTCAAAGAGCTGCATGCCCGCGATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTCAAGGCCCGCCACGATTCGTTGCTGGGCGAAATCTCGGTCAACC > NC_002947/2018982‑2019273 | ggCATCGTCAAAGAGCTGCATGCCCGCGATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGt > 1:361423/1‑150 (MQ=255) cATCGTCAAAGAGCTGCATGCCCGCGATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGc < 2:1089495/150‑1 (MQ=255) tCGTCAAAGAGCTGCATGCCCGCGATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCAGGCGTGcct < 1:2065869/150‑2 (MQ=255) gTCAAAGAGCTGCATGCCCGCGATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAg < 2:361423/150‑1 (MQ=255) tCAAAGAGCTGCATGCCCGCGATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCATGCGTGCCGAGc > 1:396978/1‑150 (MQ=255) aaaGAGCTGCATGCCCGCGATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCTAGCGt < 2:379310/150‑1 (MQ=255) agagCTGCATGCCCGCGATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGa < 2:149204/150‑1 (MQ=255) cATGCCCGCGATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTCGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTg > 2:1554211/1‑150 (MQ=255) tGCCCGCGATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGa < 1:980018/150‑1 (MQ=255) tGCCCGCGATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGa < 1:1608628/150‑1 (MQ=255) tGCCCGCGATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGa < 1:1870897/150‑1 (MQ=255) ccGCGATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTc > 1:927820/1‑150 (MQ=255) ccGCGATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGAATc > 1:1337714/1‑150 (MQ=255) gcgATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGa < 2:960780/150‑1 (MQ=255) gcgATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGAATCGa < 2:1337714/150‑1 (MQ=255) aataggaaCCCGGTAAAGAAGCTCGATCCGCTGATTGTGCTGTATGAGTCGCAGCTCAGCGCCGAGTATAAGTCCACCCGCAACCAACTGATTGTTGCCCGTNATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATc < 1:1101661/143‑1 (MQ=255) tGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATccc > 1:1375129/1‑150 (MQ=255) tGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATccc > 2:1497884/1‑150 (MQ=255) gggACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTg < 2:2316810/137‑1 (MQ=255) gggACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTg > 1:2316810/1‑137 (MQ=255) gggACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCATGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGt < 2:396978/150‑1 (MQ=255) gACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCg < 1:334589/150‑1 (MQ=255) ccTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGt > 1:550351/1‑150 (MQ=255) tGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGa > 2:579794/1‑150 (MQ=255) gaagaaGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCAGGCGTGcctct > 2:826674/1‑112 (MQ=255) gaagaaGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCAGGCGTGcctct < 1:826674/115‑4 (MQ=255) aagaagGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATg > 2:1244866/1‑150 (MQ=255) ggCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGt < 1:1130061/150‑1 (MQ=255) gCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTa < 2:550351/150‑1 (MQ=255) cGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTTGACTCGATCCCGTCGGTGATAATGGAAGGTAc < 2:174426/150‑1 (MQ=255) gATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAAt > 2:409150/1‑140 (MQ=255) tCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCtt < 2:791233/114‑1 (MQ=255) tCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCtt > 1:791233/1‑114 (MQ=255) tCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGCCGCTGATAAGGGAAGGTACCGa < 2:1375129/150‑1 (MQ=255) cGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGAtt > 1:295828/1‑150 (MQ=255) ttGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGAcc < 2:1363022/150‑1 (MQ=255) ttGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCAGCAACCAGCTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGAcc < 2:1593470/150‑1 (MQ=255) tGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGa > 2:1504989/1‑108 (MQ=255) tGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCgg < 1:448837/117‑1 (MQ=255) gATGAGTCGCAGTACAGGGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCaa > 2:1264784/1‑150 (MQ=255) gATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCaa > 1:699403/1‑150 (MQ=255) gAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCaagaa < 1:1584865/150‑1 (MQ=255) gAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCaagaa > 2:1191333/1‑150 (MQ=255) gAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCaagaa > 1:1611481/1‑150 (MQ=255) gTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGAtt < 1:2171832/131‑1 (MQ=255) gTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGAtt > 2:2171832/1‑131 (MQ=255) tCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAgcg > 2:1701138/1‑150 (MQ=255) aGCTCGGCGCCGCGTATAAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTgg < 2:295828/150‑1 (MQ=255) aGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTgg < 2:699403/150‑1 (MQ=255) tCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGaa < 1:2291075/113‑1 (MQ=255) tCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGaa > 2:2291075/1‑113 (MQ=255) aGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGt < 1:816163/150‑1 (MQ=255) aGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGt > 1:1188683/1‑150 (MQ=255) aGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGt < 2:1188683/150‑1 (MQ=255) ccGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGATATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGagc > 2:1157977/1‑150 (MQ=255) gTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAgcagca > 1:2256020/1‑150 (MQ=255) tATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGcagcag < 1:1497884/150‑1 (MQ=255) aTGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAgg > 2:2036504/1‑150 (MQ=255) tGAGTCCACCCGCAACCAACTGATTGTTGCCCCTATTATCGCGTGTTCCAGGGCGTGCTG‑TCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGgt < 1:2272048/150‑1 (MQ=255) gTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGtt > 2:2241442/1‑150 (MQ=255) tCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATccc > 2:115362/1‑80 (MQ=255) tCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATccc < 1:115362/80‑1 (MQ=255) tCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTc < 1:579794/150‑1 (MQ=255) tCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATAATGTCGGTCATATTGTTAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTc > 1:275823/1‑150 (MQ=255) cACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATaa > 2:275319/1‑89 (MQ=255) cACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACcgcgc > 1:2328532/1‑114 (MQ=255) cACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACcgcgc < 2:2328532/114‑1 (MQ=255) cACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCt > 1:1971982/1‑126 (MQ=255) cACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCt < 2:1971982/126‑1 (MQ=255) accaacTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCaagaa > 1:450910/1‑113 (MQ=255) accaacTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCaagaa < 2:450910/113‑1 (MQ=255) cTGACTGTCGCCCGTTAT‑AAGAG‑GCCCGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATGCCGTAGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGACACGCTGGCAGGTGAGCAGCCGGTGTACAAGGCCCGCCCCGCtt > 2:1003378/1‑150 (MQ=255) tGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAgg > 1:1721215/1‑82 (MQ=255) tGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAgg < 2:1721215/82‑1 (MQ=255) gttgCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTCAAGGCCCGCCACGATTCGTTg > 2:1912904/1‑150 (MQ=255) gCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTCAAGGCCCGCCACGATTCGTTGCTg > 1:601023/1‑150 (MQ=255) gCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTCAAGGCCCGCCACGATTCGTTGCTg < 2:246612/150‑1 (MQ=255) ccGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAgg > 2:1640175/1‑119 (MQ=255) ccGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAgg < 1:1640175/119‑1 (MQ=255) ccGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTCAAGGCCCGCCACGATTCGTTGCTggg > 2:1031605/1‑150 (MQ=255) tataAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTCAAGGCCCGCCACGATTCGTTGCTGGGCGaa > 1:1773881/1‑150 (MQ=255) acgctcg‑gCACGCAGGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTCAAGGCCCGCCACGATTCGTTGCTGGGCGAAAt > 1:1217685/7‑150 (MQ=255) aaaGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGGAGCGCTGGCAGGTGAGCAGCAGGTGTTCAAGGCCCGCCACGATTCGTTGCTGGGCGAAAtc > 2:42749/1‑150 (MQ=255) gctcg‑gCACGCAGGCGTGCCTAGCGTGACGGCTTGGACTTGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTCAAGGCCCGCCACGATTCGTTGCTGGGCGAAAtct > 2:791717/5‑150 (MQ=255) gag‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGgtg < 2:2183488/111‑1 (MQ=255) gag‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGgtg > 1:2183488/1‑111 (MQ=255) gag‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTCAAGGCCCGCCACGATTCGTTGCTGGGCGAAATCTCg < 1:1244866/150‑1 (MQ=255) gag‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTCAAGGCCCGCCACGATTCGTTGCTGGGCGAAATCTCg < 2:601023/150‑1 (MQ=255) ag‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTCAAGGCCCGCCACGATTCGTTGCTGGGCGAAATCTCgg > 1:1231717/1‑150 (MQ=255) ag‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTCAAGGCCCGCCACGATTCGTTGCTGGGCGAAATCTCgg < 1:1912904/150‑1 (MQ=255) gCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGt < 1:720635/96‑1 (MQ=255) gCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGt > 2:720635/1‑96 (MQ=255) gCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCCGCTGTTCCAGGCCCGCCCGGATTCGTTTTTGGGCGAAATCTCGGTc > 2:611539/1‑150 (MQ=255) gCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTCAAGGCCCGCCACGATTCGTTGCTGGGCGAAATCTCGGTc > 1:1176023/1‑150 (MQ=255) gCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACAGCGCGCAAGAAGCGCTGGCAGGTGAGGATCAGGTGTTCAAGGCCCGCCACGATTCGTTGGAGGGCGAAATCTCGGTc > 1:943973/1‑150 (MQ=255) aCGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTCAAGGCCCGCCACGATTCGTTGCTGGGCGAAATCTCGGTCaa > 1:1526802/1‑150 (MQ=255) cTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTAcc > 1:388868/1‑57 (MQ=255) cTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTAcc < 2:388868/57‑1 (MQ=255) cTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGgtg > 2:1072965/1‑102 (MQ=255) cTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGgtg < 1:1072965/102‑1 (MQ=255) | GGCATCGTCAAAGAGCTGCATGCCCGCGATGGGGACCTGGTGAAGAAGGGCGATCCGCTGATTGTGCTGGATGAGTCGCAGCTCAGCGCCGAGTATGAGTCCACCCGCAACCAACTGATTGTTGCCCGTTATAAAGAG‑GCACGCCTGCGTGCCGAGCGTGACGGCTTGGACTCGATCCCGTCGGTGATAATGGAAGGTACCGATTCTGACCGCGCGCAAGAAGCGCTGGCAGGTGAGCAGCAGGTGTTCAAGGCCCGCCACGATTCGTTGCTGGGCGAAATCTCGGTCAACC > NC_002947/2018982‑2019273 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |