| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,982,932 | T→G | 7.7% | E97A (GAG→GCG) ‡ | PP_2608 ← | shikimate dehydrogenase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,982,932 | 0 | T | G | 7.7% | 281.7 / 12.3 | 107 | E97A (GAG→GCG) ‡ | PP_2608 | shikimate dehydrogenase family protein |
| Reads supporting (aligned to +/- strand): ref base T (50/48); new base G (4/5); total (54/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 111 total aligned reads displayed.
CTCAGCCAGTGCATAGGCAATGGCACTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTGCCAGCCACGCAGGGTATCCGCAAAGCTGTCCAGC > NC_002947/2982784‑2983081 | tCAGCCAGTGCATAGGCAATGGCACTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTcg > 1:1232199/1‑150 (MQ=255) tCAGCCAGTGCATAGGCAATGGCACTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCAGACTTGGCGGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTcg > 1:1309726/1‑150 (MQ=255) tCAGCCAGTGCATAGGCAATGGCACTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCACGCTCCTGCGCCGATCTGAGGATGGCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTcg > 1:274790/1‑150 (MQ=255) gCCAGTGCATAGGCAATGGCACTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGa > 2:1490814/1‑150 (MQ=255) ccAGTGCATAGGCAATGGCACTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGAc > 2:744523/1‑150 (MQ=255) cAGTGCATAGGCAATGGCACTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGAGCGCGACg > 1:621628/1‑150 (MQ=255) tGCATAGGCAATGGCACTGCCAACACCGCCGCAACCGATCCCAAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGCAGCCGCTTGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTAt < 1:1918195/150‑1 (MQ=255) tGCATAGGCAATGGCACTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGAGCGCGACggac < 2:621628/150‑4 (MQ=255) tGCATAGGCAATGGCACTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGAGCGCGACggac < 1:1576642/150‑4 (MQ=255) ggCAATGGCACTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACAtt < 2:1343791/150‑1 (MQ=255) cAATGGCACTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGa < 1:592789/150‑1 (MQ=255) aTGGCACTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCTCAGCAGGCGTCCGTCGCGCTAGGGACGTATCACATTGATc < 1:80483/150‑1 (MQ=255) gCACTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGa < 1:796362/132‑1 (MQ=255) gCACTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGa > 2:796362/1‑132 (MQ=255) gCACTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAg < 1:2115145/150‑1 (MQ=255) aCTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGcc > 2:377823/1‑150 (MQ=255) aCTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGcc < 2:211611/150‑1 (MQ=255) aCTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGcc > 1:1736868/1‑150 (MQ=255) tGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCa > 2:345803/1‑150 (MQ=255) cAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAggg < 2:2034875/150‑1 (MQ=255) aaCACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGc > 2:2147311/1‑150 (MQ=255) acacCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCa < 2:1623695/150‑1 (MQ=255) cacCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCGCGCGACGTATCACATTGATCGAGCCCAGGGCAg < 1:1490814/150‑1 (MQ=255) acCGCCTCATCCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGc > 2:1259002/1‑150 (MQ=255) ccgccgCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGcc > 2:2337307/1‑150 (MQ=255) ccgccgCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGcc < 1:1723221/150‑1 (MQ=255) aCCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGcgctc > 1:108265/1‑150 (MQ=255) cGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGAGCGCGACgga < 1:196040/114‑3 (MQ=255) cGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGAGCGCGACgga > 2:196040/1‑112 (MQ=255) gATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGcgctcgct > 1:332798/1‑150 (MQ=255) aCCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAgg > 1:643517/1‑150 (MQ=255) ccAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATAGTTTTCATGGCAGCCGCGCGCTCGCTCAGGc < 1:653674/150‑1 (MQ=255) ccAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTACGTCGCGAGCGCGACgga < 2:1398460/108‑3 (MQ=255) ccAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTACGTCGCGAGCGCGACgga > 1:1398460/1‑106 (MQ=255) cAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGa > 1:926616/1‑120 (MQ=255) cAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGa < 2:926616/120‑1 (MQ=255) cAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGcc < 2:827835/150‑1 (MQ=255) tGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTc < 1:2337307/150‑1 (MQ=255) tGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTc > 1:1767008/1‑150 (MQ=255) ccGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGa > 2:1440028/1‑97 (MQ=255) ccGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCCCATTGATCGCGCCCACGTCAACCCCTCGCGCGCTCAGGCCGTCCaa > 2:21345/1‑149 (MQ=255) ccGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAgg > 2:1245580/1‑142 (MQ=255) ccGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAgg < 1:1245580/142‑1 (MQ=255) cccGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTg < 2:332798/150‑1 (MQ=255) ggCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAgc < 2:643517/150‑1 (MQ=255) gCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAgcg > 1:2054349/1‑150 (MQ=255) cTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTTGTGGTCGCGACGTATCACAGTTATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAgcgc < 1:283294/150‑1 (MQ=255) cTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAgcgc < 1:1724977/150‑1 (MQ=255) tCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGcc > 2:557864/1‑150 (MQ=255) tCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGcc < 2:1767008/150‑1 (MQ=255) gAAGCCGTATTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATGGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTg > 2:679638/1‑150 (MQ=255) gAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTg > 2:1098083/1‑150 (MQ=255) aaGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGc < 1:1271125/150‑1 (MQ=255) gCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCtt < 2:2304593/150‑1 (MQ=255) cATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGt < 1:2052735/150‑1 (MQ=255) cATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGCCCGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGt < 1:1697046/150‑1 (MQ=255) aTGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTa > 1:119197/1‑150 (MQ=255) gCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAg < 1:557864/150‑1 (MQ=255) cTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAgg < 1:2125705/150‑1 (MQ=255) ttGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCCCTGTGCATTTTCAGTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGc < 2:1736868/150‑1 (MQ=255) ttGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGc > 2:1793535/1‑150 (MQ=255) gcgcAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACgg < 1:2240460/150‑1 (MQ=255) gcAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTg < 2:2051405/150‑1 (MQ=255) ccGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACg > 1:2173267/1‑150 (MQ=255) cGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCa < 2:1238140/138‑1 (MQ=255) cGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCa > 1:1238140/1‑138 (MQ=255) cGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGc > 1:843567/1‑150 (MQ=255) cGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGc > 2:476476/1‑150 (MQ=255) gAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCa > 2:2313013/1‑150 (MQ=255) aGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCaa > 2:561192/1‑150 (MQ=255) ggAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCcgc < 2:1837208/85‑1 (MQ=255) ggAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCcgc > 1:1837208/1‑85 (MQ=255) aGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGc < 2:966254/122‑1 (MQ=255) aGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGc > 1:966254/1‑122 (MQ=255) aGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACcgc > 2:359064/1‑150 (MQ=255) gCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACg > 1:1259853/1‑142 (MQ=255) gCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACg < 2:1259853/142‑1 (MQ=255) gCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACcgcg > 2:1313338/1‑150 (MQ=255) ccGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCgcgc < 2:272028/150‑1 (MQ=255) gTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTg > 2:464463/1‑150 (MQ=255) tCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTgc > 2:1178054/1‑150 (MQ=255) aacacaTTGTAGCCCAGCACCACCCCGTCGCAATCGCGACGTATCACAATGAGCGAGCCCAGGGCAACCGGGCGCTCGATCAGGCCGTCCACGCGGTTGGCCAGCGACTGCGCCTAAAGCACGAGGAACCCGCAAACGGCCAGGtcccaa > 2:1551953/3‑145 (MQ=255) cacaTTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTgcca < 1:433164/150‑1 (MQ=255) acaTTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTgccag > 2:1797947/1‑150 (MQ=255) acaTTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTgccag > 1:342503/1‑150 (MQ=255) caTTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTgccagc < 2:635819/150‑1 (MQ=255) tGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTGCCAGCCAc < 2:108265/150‑1 (MQ=255) cccAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTgcca < 1:554603/140‑1 (MQ=255) cccAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTgcca > 2:554603/1‑140 (MQ=255) cccAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTGCCAGCCACGCAgg < 2:119197/150‑1 (MQ=255) cagGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTGCCAGCCACGCAGGGTATc < 1:2147311/150‑1 (MQ=255) cagGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTGCCAGCCACGCAGGGTATc < 2:342503/150‑1 (MQ=255) agGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTGCCAGCCACGCAGGGTATcc < 2:2173267/150‑1 (MQ=255) tccgtcGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGCCAGGCACGGTGACCACGCAACCGCGCCGGTCCTGCCAACCACGCAGTGTATCCGCaaa < 2:1309726/150‑1 (MQ=255) acgtcGCGCGCGCGAGGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTGCCAGCCACGCAGGGTATCCGCAAAg > 2:463099/2‑150 (MQ=255) gtcGCGCTCTCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCCCTCGCTCATGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACACAACCGCGCAGGTTCTGCCAGCCACGCAGGGTATCCGCAAAGCt < 1:938483/150‑1 (MQ=255) tCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTg < 1:1074772/116‑1 (MQ=255) tCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTg > 2:1074772/1‑116 (MQ=255) tCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTGCCAGCCACGCAGGGTATCCGCAAAGCTGTCCAgc > 1:277741/1‑150 (MQ=255) tCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTAGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTGCCAGCCACGCAGGGTATCCGCAAAGCTGTCCAgc > 2:1683457/1‑150 (MQ=255) | CTCAGCCAGTGCATAGGCAATGGCACTGCCAACACCGCCGCAACCGATCACCAGTGCCCGTTTGCCCGCCGGCTCGAAGCCATGCTTGTGCGCAGCGCCGAGGAAGCCGGCGCCGTCCACATTGTCGCCCAGCAGGCGTCCGTCGCGCTCGCGACGTATCACATTGATCGAGCCCAGGGCAGCCGCGCGCTCGCTCAGGCCGTCCACGCGGTTGGCCAGCGCCTGCTTGTAAGGCACGGTGACCACGCAACCGCGCAGGTTCTGCCAGCCACGCAGGGTATCCGCAAAGCTGTCCAGC > NC_002947/2982784‑2983081 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |