Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,218,828 | T→A | 9.9% | E158V (GAA→GTA) | nfxB ← | HTH‑type transcriptional regulator NfxB |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,218,828 | 0 | T | A | 9.9% | 254.6 / 14.2 | 90 | E158V (GAA→GTA) | nfxB | HTH‑type transcriptional regulator NfxB |
Reads supporting (aligned to +/- strand): ref base T (41/40); new base A (5/4); total (46/44) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
TTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCGGTTCGTCT > NC_002947/3218681‑3218975 | ttGTCCAGGCACTTGGCCCCAGGG‑AGCTATGCCCTGGGGTTTTGTTGGCTTGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCGCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCg < 2:574921/150‑1 (MQ=255) tGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCgg < 1:411031/150‑1 (MQ=255) cAGCCACCTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCTGCATc < 1:974199/150‑1 (MQ=255) aGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATc‑g > 2:1252016/1‑150 (MQ=255) gCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TACGGCATc‑gt > 2:636312/1‑149 (MQ=255) ccACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCCGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATc‑gac > 2:1830375/1‑150 (MQ=255) cACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATc‑gacg > 2:258796/1‑150 (MQ=255) aCTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGTCGCCCGCCCGCGTCG‑TTCGGCATc‑gacga > 2:2123771/1‑150 (MQ=255) aCTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATc‑gacga < 2:434013/150‑1 (MQ=255) aCTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTAACGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATc‑gacga > 1:2262945/1‑150 (MQ=255) ttGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCTGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATg > 1:1725273/1‑150 (MQ=255) cccAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCAt < 2:430563/137‑1 (MQ=255) cccAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCAt > 1:430563/1‑137 (MQ=255) cccAGGG‑ATCGATGCACGGAGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTa > 1:2302259/1‑150 (MQ=255) ccAGGGCATCGAT‑CCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCg > 2:799725/1‑132 (MQ=255) ccAGGGCATCGAT‑CCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCg < 1:799725/132‑1 (MQ=255) ccAGGG‑ATCGATGCCCTGGGGTTTTTTTTTCTTTTTAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGTCGTCCCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑CACGATGCAGtcc > 2:838944/1‑148 (MQ=255) ccAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAACGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TACGGCATC‑GTCGATGCCGAac < 1:636312/150‑1 (MQ=255) ccAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TACGGCATC‑GTCGATGCCgaa > 1:860105/1‑147 (MQ=255) ccAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TACGGCATC‑GTCGATGCCgaa < 2:860105/149‑3 (MQ=255) ggg‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACAcc > 2:985683/1‑150 (MQ=255) gATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCAAACGGGGTCCTCATCAACGTCGAGGAAAAGCAGCTCGTTCTTTATCTGTGAGTTCGCGCTTGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GAAGATGCAGTACACCATGC‑Tc > 1:1112961/1‑150 (MQ=255) aTGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCa < 1:963212/150‑1 (MQ=255) cccTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGa < 1:1904234/150‑1 (MQ=255) ccTGGGGTTTTGTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGaa < 1:717788/150‑1 (MQ=255) tttttttGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCTCGGACGTCGCGCTGGCCGCGCGGACG‑GTAGAAATGCCGGC‑TACGATGCCGTACACCATGC‑TCAGGAACATTTCg > 1:1686091/1‑150 (MQ=255) tttttGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTGCgtt < 2:2262945/150‑3 (MQ=255) tttGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGa < 1:1890053/150‑1 (MQ=255) tgggCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGaa < 1:1699510/148‑1 (MQ=255) gCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGAt > 2:1916421/1‑150 (MQ=255) cTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATc < 2:2183789/150‑1 (MQ=255) tGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATcg > 1:1408276/1‑150 (MQ=255) ggTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATcgc < 2:691800/150‑1 (MQ=255) gTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATcgcc > 2:1945073/1‑150 (MQ=255) tGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGACA‑AT‑GGCGCCTGACGGTGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATcgccg > 2:653063/1‑150 (MQ=255) aaGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TACGGCATC‑GTCGATGCCgaac > 2:710681/1‑111 (MQ=255) aaGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TACGGCATC‑GTCGATGCCGAac < 1:710681/114‑1 (MQ=255) cAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGCACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGa < 1:1830375/150‑1 (MQ=255) aGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGat > 2:1577866/1‑150 (MQ=255) cgagcgGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATa < 2:1408276/150‑1 (MQ=255) cgagcgGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TACGGCATC‑GTCGATGCCga < 1:92511/100‑2 (MQ=255) cgagcgGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TACGGCATC‑GTCGATGCCga > 2:92511/1‑99 (MQ=255) tcgacggTGCTGCGGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGTCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATAc > 2:1948820/6‑150 (MQ=255) gagcgGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATAc < 1:838267/150‑1 (MQ=255) gcgGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACgg < 1:838944/150‑1 (MQ=255) gTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAg < 1:258796/150‑1 (MQ=255) gcagcaCCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACAttt < 2:1837268/109‑1 (MQ=255) gcagcaCCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACAttt > 1:1837268/1‑109 (MQ=255) aCCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCctg < 1:1252016/150‑1 (MQ=255) ccGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCAGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGCAGATCGCCGCGCTGATATCCATACGGAAAGCCCCCGCctgc > 2:1007154/1‑150 (MQ=255) cggcGAGGAAAAGCAGCGCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCctgct < 2:1112961/147‑1 (MQ=255) cGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGa < 1:720726/111‑1 (MQ=255) cGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGa > 2:720726/1‑111 (MQ=255) ggAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTCCACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCcgc > 1:1102594/1‑150 (MQ=255) gAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCcgcg > 2:2105077/1‑150 (MQ=255) agcagcTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAgg < 1:2010875/150‑1 (MQ=255) gcagcTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATcgcc < 1:1951998/104‑1 (MQ=255) gcagcTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATcgcc > 2:1951998/1‑104 (MQ=255) cagcTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGCGTCA‑ACAGAGGGCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGgaa > 1:735025/1‑150 (MQ=255) tCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGaagaag < 1:985683/150‑1 (MQ=255) tCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGaagaag > 1:675121/1‑150 (MQ=255) tCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGaagaag > 1:2254043/1‑150 (MQ=255) cAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACAcc > 1:1095183/1‑67 (MQ=255) cAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACAcc < 2:1095183/67‑1 (MQ=255) cAGCGTTTGCACGGACGTCGCGCCGGCCGCCCGCCCGCGTCG‑TTCGGCCTC‑GACGATGCCGTCCACCATGC‑TCAGGACAATTGCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGc < 1:1916421/150‑1 (MQ=255) cGTTTGCACGGACGTCACGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATc > 1:2295301/1‑150 (MQ=255) ttGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAg < 2:1686091/150‑1 (MQ=255) gCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGc > 1:1802161/1‑142 (MQ=255) gCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGc < 2:1802161/142‑1 (MQ=255) aCGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCa < 2:341850/130‑1 (MQ=255) aCGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCa > 1:341850/1‑130 (MQ=255) aCGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGc < 1:1966463/140‑1 (MQ=255) aCGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGc > 2:1966463/1‑140 (MQ=255) ggACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTc > 1:2256686/1‑150 (MQ=255) acgcTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAg < 2:2295301/149‑1 (MQ=255) cgcTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAgg > 2:297334/1‑150 (MQ=255) gcTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGACGCCCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGc > 2:1937246/1‑150 (MQ=255) gcccgcccgcGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCAc > 2:1655705/1‑150 (MQ=255) ccgcccgcGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGaagaag > 2:1273241/1‑118 (MQ=255) ccgcccgcGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGaagaag < 1:1273241/118‑1 (MQ=255) cccgcGTCG‑TTCGGCATC‑GACGATGCCGTACACCCTGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCg < 2:1102594/150‑1 (MQ=255) cgcgTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCggg > 1:1809183/1‑149 (MQ=255) gcgTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCGCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCGGtt < 2:780525/150‑1 (MQ=255) cgtcg‑tTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCGGTTc < 1:1577866/150‑1 (MQ=255) cgtcg‑tTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCGGTTc < 1:1781557/150‑1 (MQ=255) cgtcg‑tTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGACGCCGGCATAGGCCCGCCACGGGCGGTTc < 1:653063/150‑1 (MQ=255) tcg‑tTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCGGTTCGt > 2:2033504/1‑150 (MQ=255) g‑tTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGc > 2:2035587/1‑79 (MQ=255) g‑tTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGc < 1:2035587/79‑1 (MQ=255) g‑tTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCGGTTCGtct > 1:84878/1‑150 (MQ=255) | TTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCGGTTCGTCT > NC_002947/3218681‑3218975 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |