| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,380,752 | G→A | 6.1% | Q127Q (CAG→CAA) ‡ | tnpT‑I → | cointegrate resolution protein T |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,380,752 | 0 | G | A | 6.1% | 289.0 / 6.3 | 99 | Q127Q (CAG→CAA) ‡ | tnpT‑I | cointegrate resolution protein T |
| Reads supporting (aligned to +/- strand): ref base G (48/44); new base A (4/2); total (52/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.99e-01 | |||||||||||
Only 100 of 101 total aligned reads displayed.
CTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGACAGCCAAATTCGCTCGCTGGAGGAAAAGCATCAAC > NC_002947/3380606‑3380900 | cTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCt > 1:2179972/1‑150 (MQ=255) agagGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGt < 2:2179972/150‑1 (MQ=255) gaggagGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCCTGAAGCTGtt > 1:577496/1‑150 (MQ=255) ggaTGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGAGCTCACGGAACAGCTTCAGGCTGTTCAGCa > 1:436969/1‑150 (MQ=255) gaTGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCaa > 1:1222499/1‑150 (MQ=255) gaTGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCCTGAAGCTGTTccgtga < 2:577496/150‑6 (MQ=255) cgcAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAgcgc < 1:910114/150‑1 (MQ=255) gcAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAAAGGATCGCTTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCt > 2:2077361/1‑150 (MQ=255) gCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTAcag > 1:2057097/1‑150 (MQ=255) cACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTAcagca > 1:538892/1‑150 (MQ=255) cACCGTGGCCCAGGAGCGCAAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTAcagca > 2:1202133/1‑150 (MQ=255) aCCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTAcagcag > 1:1522964/1‑150 (MQ=255) gCCCAGGAGCGCAAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAAcag < 1:1202133/150‑1 (MQ=255) ccAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATTCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACCGACTTAGGCTGTTCAGCAAGCGCTACAGCAGGAAcagca < 1:1354913/150‑1 (MQ=255) cAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGCATAAAGCAGTTGGAAAGTCAGAGCAGCGGGCACACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAAcagcag > 2:261814/1‑150 (MQ=255) cAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAAcagcag < 2:1774659/150‑1 (MQ=255) cAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAAcagcag > 1:362855/1‑150 (MQ=255) cgcgAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGc > 2:1923358/1‑150 (MQ=255) cgcgAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGc < 2:1222499/150‑1 (MQ=255) cgcgAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTAGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGc > 2:630954/1‑150 (MQ=255) gAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCGGCAACGCCaa < 2:738528/150‑1 (MQ=255) gAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCCACAACGGGAACAGCATCAACGCCaa > 2:540499/1‑150 (MQ=255) caacTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAg > 1:784086/1‑150 (MQ=255) caacTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAg > 2:738152/1‑150 (MQ=255) acTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGATTCAGGCTGTTAAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGAc < 1:1805627/150‑1 (MQ=255) tACAACGCGAACGGCTCGATTACCAGAACCCAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAAcagcag < 2:851545/134‑1 (MQ=255) tACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAAcagcag > 1:851545/1‑134 (MQ=255) aCAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAGTCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAgg < 1:371601/101‑1 (MQ=255) aCAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAGTCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAgg > 2:371601/1‑101 (MQ=255) cAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGACCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑Ag < 1:999852/150‑1 (MQ=255) aCGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGt < 2:1030547/150‑1 (MQ=255) cgcgAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCCGGAACAGCAGCAACGCCAACAGAc < 1:998490/143‑1 (MQ=255) cgAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTga < 2:1522964/150‑1 (MQ=255) aCGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAgg < 1:1045905/116‑1 (MQ=255) aCGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAgg > 2:1045905/1‑116 (MQ=255) aCGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAgcagca < 2:1129233/126‑1 (MQ=255) aCGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAgcagca > 1:1129233/1‑126 (MQ=255) ccAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGgc < 1:2077361/150‑1 (MQ=255) ccAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGgc > 1:636396/1‑150 (MQ=255) ccAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGgc > 2:1271928/1‑150 (MQ=255) cAGAACCAAGCTCGGCTGGCCGAAATCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCCTGAAGCTGtt > 2:2009626/1‑84 (MQ=255) cAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGgcg > 2:284977/1‑150 (MQ=255) cAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGgcg > 1:827679/1‑150 (MQ=255) aaCCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAg > 1:1437816/1‑150 (MQ=255) aCCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAgg < 1:137291/150‑1 (MQ=255) aCCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAgg < 2:2057097/150‑1 (MQ=255) acacgatCGGCTGGCTGAAATCCTAATCCAGCAGTTGGAAAGTCAGAGCCGCGGGATCACGCAACAGCTTCACGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTTAGAATGCCCGCTTGGCGCAGGc < 2:436969/144‑1 (MQ=255) ggCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCg > 2:1268967/1‑150 (MQ=255) tGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATc < 2:784086/150‑1 (MQ=255) ggCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCa < 2:1741594/150‑1 (MQ=255) gAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCCTGAAGCTGTTccgt < 1:2326833/67‑4 (MQ=37) gAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCCTGAAGCTGTTccgt > 2:2326833/1‑64 (MQ=37) cGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCaa < 1:1816055/93‑1 (MQ=255) cGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCaa > 2:1816055/1‑93 (MQ=255) cGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTgcgc < 2:636396/150‑1 (MQ=255) cagcagTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCTCCTGCAg > 2:560495/1‑150 (MQ=255) agcagTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑Ag > 1:189494/1‑95 (MQ=255) agcagTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑Ag < 2:189494/95‑1 (MQ=255) agcagTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAgg > 2:155317/1‑150 (MQ=255) agTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATc < 1:738152/150‑1 (MQ=255) ttGGAAAGTCAGAGCAGCGGGCTCACGGACCAGCTTCAGGCTGTTCAGCAAGCGCTATAGCAGGAACAGCAGCACCG‑‑AGCTGGCCGGTAACGTTG‑GAAAGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATcgc > 1:1113667/1‑150 (MQ=255) ttGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAAcagc < 1:1786846/70‑1 (MQ=255) ttGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAAcagc > 2:1786846/1‑70 (MQ=255) ttGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCTCCTGCAGGATcgc < 1:560495/150‑1 (MQ=255) ggAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGa < 2:2172725/150‑1 (MQ=255) ggAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGa > 2:197019/1‑150 (MQ=255) ggAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGa > 1:1040407/1‑150 (MQ=255) gAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATcgc < 1:216303/147‑1 (MQ=255) gAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATcgc > 2:216303/1‑147 (MQ=255) gTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTgcgc < 1:1425747/131‑1 (MQ=255) gTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTgcgc > 2:1425747/1‑131 (MQ=255) gTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGACAGcc > 2:281632/1‑150 (MQ=255) agagCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCt < 1:790901/96‑1 (MQ=255) agagCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCt > 2:790901/1‑96 (MQ=255) agagCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCag < 2:413804/119‑1 (MQ=255) agagCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCag > 1:413804/1‑119 (MQ=255) agcGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGACAGCCAAATtcgc < 1:1268967/150‑1 (MQ=255) gcGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAAc < 1:874053/60‑1 (MQ=255) gcGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAAc > 2:874053/1‑60 (MQ=255) ggCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTACAGGATCGCGACAGCCAAATtcgctcgc < 1:630954/150‑1 (MQ=255) cTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGACAGCCAAATTCGCTCGCTg > 1:758052/1‑150 (MQ=255) cTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGACAGCCAAATTCGCTCGCTg < 1:1905600/150‑1 (MQ=255) tCACTGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGa < 1:489305/124‑1 (MQ=255) tCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAAc > 2:2045463/1‑98 (MQ=255) tCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAAc < 1:2045463/98‑1 (MQ=255) tCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAg > 1:689042/1‑122 (MQ=255) tCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGa > 2:489305/1‑124 (MQ=255) tCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGGGCGCCTGCAg < 2:689042/122‑1 (MQ=255) aCGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGACAGCCAAATTCGCTCGCTggag < 2:1890421/150‑1 (MQ=255) tgAACAGCCTGAAGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGACAGCCAAATTCGCTCGCTggagga > 1:419071/2‑150 (MQ=255) aaCAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGt > 1:403798/1‑106 (MQ=255) aaCAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGt < 2:403798/106‑1 (MQ=255) cAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGACAGCCAAATTcgctcgct > 1:608116/1‑140 (MQ=255) cAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGACAGCCAAATTcgctcgct < 2:608116/140‑1 (MQ=255) aGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGACAGCCAAATTCGCTCGCTGGAGGAAAAGc > 1:2008234/1‑150 (MQ=255) aGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGACAGCCAAATTCGCTCGCTGGAGGAAAAGc > 1:638361/1‑150 (MQ=255) cTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGACAGCCAAATTCGCTCGCTGGAGGAAAAGCAt < 2:638361/150‑1 (MQ=255) ttCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGACAGCCAAATTCGCTCGCTGGAGGAAAAGCATc < 2:2008234/150‑1 (MQ=255) ttCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAAAAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGGGTCTGAAGGATCGCGACAGCCAAATACGCTCGCCCGAGGAAAACCacc > 2:1777468/1‑148 (MQ=255) aGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGACAGCCAAATTCGCTCGCTGGAGGAAAAGCATCAAc < 1:261814/150‑1 (MQ=255) | CTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCG‑‑‑AGGTTGAGAATGCCCGCTTGGCGCAGGCTAACGGCGATCAGGAGGTGCGCCTGCAGGATCGCGACAGCCAAATTCGCTCGCTGGAGGAAAAGCATCAAC > NC_002947/3380606‑3380900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |