Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,995,397 | A→T | 6.9% | intergenic (‑118/+32) | PP_3521 ← / ← PP_3522 | membrane protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,995,397 | 0 | A | T | 6.9% | 168.6 / 2.5 | 56 | intergenic (‑118/+32) | PP_3521/PP_3522 | membrane protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (27/25); new base T (2/2); total (29/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 |
GTCAGTAAGCGTGGTCGTGCCTGTACTCATGGTGTGGTCACCTCTGAGTGGGATTGTTGTTATAGCGGCATTTAGTCAGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGTGCAGGTCGGTTTCATGTGCGCTCCCCAGGCC > NC_002947/3995250‑3995543 | gTCAGTAAGCGTGGTCGTGCCTGTACTCATGGTGTGGTCACCTCTGAGTGGGATTGTTGTTATAGCGGCATTTAGTCAGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAAc < 1:1808130/150‑1 (MQ=255) atcttGGTCGTGCCTGTACTCATGGTGTGGTCACCTCTGAGTGGGATTGTTGTTATAGCGGCATTTAGTCAGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTTTACCcgcgaa < 1:369299/146‑3 (MQ=255) ggTCGTGCCTGTACTCATGGTGTGGTCACCTCTGAGTGGGATTGTTGTTATAGCGGCATTTAGTCAGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACgg < 1:2099253/150‑1 (MQ=255) tCGTGCCTGTACTCATGGTGTGGTCACCTCTGAGTGGGATTGTTGTTATAGCGGCATTTAGTCAGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGTGGGTAAACCCGCGCCCACGGGc < 1:900777/150‑1 (MQ=255) ggTGTGGTCACCTCTGAGTGGGATTGTTGTTATAGCGGCATTTAGTCAGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCtttt < 1:1966864/150‑1 (MQ=255) tgGTCACCTCTGAGTGGGATTGTTGTTATAGCGGCATTCAGTCAGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAgg < 1:1847469/150‑1 (MQ=255) ctctGAGTGGGATTGTTGTTATAGCGGCATTTAGTCAGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAg > 2:2174717/1‑150 (MQ=255) ggATTGTTGTTATAGCGGCATTTAGTCAGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGAcggc > 2:2158871/1‑150 (MQ=255) ttgttgTTATAGCGGCATTTAGTCAGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACggcggc < 1:858958/150‑1 (MQ=255) ttATAGCGGCATTTAGTCAGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACAAACGCCCACGAACAACCGAGCCGGCTTTTCAGGATTTGAAAAAAACGAAGGCTAATga > 2:10079/1‑149 (MQ=255) ataGCGGCATTTAGTCAGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCtt < 1:115854/150‑1 (MQ=255) gTCAGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAg > 2:591709/1‑150 (MQ=255) tCAGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGc > 2:2078292/1‑150 (MQ=255) aGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTc < 2:2195757/135‑1 (MQ=255) aGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTc > 1:2195757/1‑135 (MQ=255) ggACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATg > 1:2079258/1‑150 (MQ=255) ggCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTc < 2:2079258/150‑1 (MQ=255) gCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGcc < 2:1087058/89‑1 (MQ=255) gCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGcc > 1:1087058/1‑89 (MQ=255) gCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTcc > 1:1356536/1‑150 (MQ=255) ccGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGt < 1:10079/150‑1 (MQ=255) ccGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGt < 1:2078292/150‑1 (MQ=255) cGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTg > 1:2180228/1‑150 (MQ=255) gATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGAc < 1:2315805/78‑1 (MQ=255) gATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGAc > 2:2315805/1‑78 (MQ=255) atatACAAGGAAGAACCACCGTGAGGATGGCGCCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGcc < 1:1196805/150‑1 (MQ=255) atatACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGcc > 1:1390685/1‑150 (MQ=255) tataCAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTTTTCGCGGGTAAACCcgc > 1:1805962/1‑63 (MQ=255) tataCAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCcgc < 2:1805962/63‑1 (MQ=255) aCAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTTTACCcgcg > 2:2019188/1‑61 (MQ=25) aCAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTTTACCcgcg < 1:2019188/61‑1 (MQ=25) aCAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGcc > 2:2111167/1‑150 (MQ=255) aaGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTccacca > 2:1947365/1‑127 (MQ=255) aaGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTccacca < 1:1947365/127‑1 (MQ=255) aaGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATTCCGTCCAGTGACAGCCgg > 2:448645/1‑150 (MQ=255) aGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGCCCGAGCCGGCTTTTCTGGTTTTGAGCAAGACGGCGGCTCCTACTTGGATCTCCACCAGCATGCCGTCAATTGCCAGCCggg > 2:378926/1‑150 (MQ=38) aGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCggg < 1:880599/150‑1 (MQ=255) caccGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCAACAGCATGCCCTCCAGTGCCATCCGGGGCACCGGTa > 1:401619/1‑150 (MQ=255) accGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCGGGGCACCGGTAt < 1:2158871/150‑1 (MQ=255) aGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGt < 1:2174717/150‑1 (MQ=255) aGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGt < 1:591709/150‑1 (MQ=255) ggATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGTg > 2:160951/1‑150 (MQ=255) gATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGTGc > 1:1886862/1‑150 (MQ=255) tGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGTGCAg > 2:1684542/1‑150 (MQ=255) aCGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGTGCAGGTCGGTTTCAt < 2:2180228/150‑1 (MQ=255) gCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGTGCAGGTCGGt > 2:2296784/1‑143 (MQ=255) gCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGTGCAGGTCGGt < 1:2296784/143‑1 (MQ=255) gCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGTGCAGGTCGGTTTCAtgt > 2:1586265/1‑150 (MQ=255) cGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCa < 2:2024970/50‑1 (MQ=255) cGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCa > 1:2024970/1‑50 (MQ=255) cGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGTGCAGGTCGGTTTCATGTgc > 2:192667/1‑150 (MQ=255) gtgggcgcgGGTTTACCCGCGAACACCGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGTGCAGGTCGGTTTCATGTgcgc > 1:290385/6‑150 (MQ=255) gcgGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGTGCAGGTCGGTTTCATGTGCGCTCCCCa < 1:2111167/150‑1 (MQ=255) gTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGTGCAGGTCGGTTTCATGTGCGCTCCCCAGGcc > 1:663940/1‑150 (MQ=255) gTAAACCCGCGCCCACGGGCGACCGAGACGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCa > 2:2167788/1‑91 (MQ=255) gTAAACCCGCGCCCACGGGCGACCGAGACGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCa < 1:2167788/91‑1 (MQ=255) | GTCAGTAAGCGTGGTCGTGCCTGTACTCATGGTGTGGTCACCTCTGAGTGGGATTGTTGTTATAGCGGCATTTAGTCAGGACCGGCACCGATATACAAGGAAGAACCACCGTGAGGATGGCACCGGCTACGCCGGTGTTCGCGGGTAAACCCGCGCCCACGGGCGACCGAGCCGGCTTTTCAGGTTTTGAGCAAGACGGCGGCTACTGCTTCGATCTCCACCAGCATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGTGCAGGTCGGTTTCATGTGCGCTCCCCAGGCC > NC_002947/3995250‑3995543 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |