| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,233,497 | G→A | 5.1% | intergenic (+130/+100) | PP_5626 → / ← PP_3711 | repressor‑like DNA‑binding domain‑containing protein/diguanylate cyclase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,233,497 | 0 | G | A | 5.1% | 333.5 / 4.1 | 111 | intergenic (+130/+100) | PP_5626/PP_3711 | repressor‑like DNA‑binding domain‑containing protein/diguanylate cyclase |
| Reads supporting (aligned to +/- strand): ref base G (54/50); new base A (2/4); total (56/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.34e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 114 total aligned reads displayed.
ATCGATCGGTGGAAGGCTGAGGGAGGAAGGCACAAGCTGGCTTACTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCC > NC_002947/4233348‑4233645 | atcgatcgGTGGAAGGCTGAGGGAGGAAGGCACAAGCTGGCTTACTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTgg < 2:1047465/150‑1 (MQ=255) cgatcgGTGGAAGGCTGAGGGAGGAAGGCACAAGCTGGCTTACTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTgggg < 2:1784721/150‑1 (MQ=255) tcgGTGGAAGGCTGAGGGAGGAAGGCACAAGCTGGCTTACTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCtt > 1:1350067/1‑150 (MQ=255) cgGTGGAAGGCTGAGGGAGGAAGGCACAAGCTGGCTTACTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCttt < 2:1151578/150‑1 (MQ=255) gTGGAAGGCTGAGGGAGGAAGGCACAAGCTGGCTTACTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGa < 2:161897/150‑1 (MQ=255) tGGAAGGCTGAGGGAGGAAGGCACAAGCTGGCTTACTGAAAGCTCAGCGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGAc < 2:523313/150‑1 (MQ=255) ggAAGGCTGAGGGAGGAAGGCACAAGCTGGCTTACTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGAcc < 2:768171/150‑1 (MQ=255) gcatggtcatgccgatggacttcattttctagacacataccccttcagtgtcaaaacccacaaggttttgactgctcctgctcctgctcctgctcctgctcctgctcctgctcctgctttaggTCAAAGCCTTTGGGGCTTTGACCTaaa < 2:1987119‑M1/27‑1 (MQ=255) tGAGGGAGGAAGGCACAAGCTGGCTTACTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagca > 2:2163761/1‑150 (MQ=255) tGAGGGAGGAAGGCACAAGCTGGCTTACTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTCGACCTAAagca > 2:1221715/1‑150 (MQ=255) gggaggAAGGCACAAGCTGGCTTACTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcagga < 1:1923296/150‑1 (MQ=255) ggCAAAAGCTGGGGTACTTAAAGCTCCGGGCTGCTCGGTTTGGCAGTAGACCTCCTCAGCTTCACGCACAATAAATCAGCACCGAGCTTTGCTCTTTCAATCAAGTGAATCAAAGCTTTTTGGTCGTTGACTTAAagccggagtaggagc > 2:193555/1‑150 (MQ=255) gCTGGCTTACTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTCGACCTAAagcaggagcaggagcaggagca < 1:1221715/150‑1 (MQ=255) gCTTACTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcag > 1:361931/1‑129 (MQ=255) cTTACTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTaaa < 2:1866048/124‑1 (MQ=255) cTTACTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTaaa > 1:1866048/1‑124 (MQ=255) ttACTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCttt > 2:2140368/1‑115 (MQ=255) aCTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcaggagcaggagcagg > 2:1488466/1‑150 (MQ=255) cTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcaggagcaggagcagga > 1:502737/1‑150 (MQ=255) aaaGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGAcc > 2:500360/1‑113 (MQ=255) aaaGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGAcc < 1:500360/113‑1 (MQ=255) aaGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcag < 1:1509173/132‑1 (MQ=255) aaGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcag > 2:1509173/1‑132 (MQ=255) gCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcaggagcaggagcaggagcagga > 2:1770855/1‑150 (MQ=255) cTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcaggagcaggagcaggagcaggag < 2:1444998/150‑1 (MQ=255) aGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcaggagcaggagcaggagcaggagcag < 1:549367/150‑1 (MQ=255) aGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcaggagcaggagcaggagcaggagcag > 2:549367/1‑150 (MQ=255) tgctCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAACGCCTTTGGGGCTTTGACCTAAAGCAggagcagaagcaggagcaggagcaggagcaggagcaggagca < 2:807225/150‑1 (MQ=255) tgctCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcag > 1:2048836/1‑109 (MQ=255) tgctCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcag < 2:2048836/109‑1 (MQ=255) ctCGGTTTGACTGTAGACCTGCTCACGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGt < 1:2226583/150‑1 (MQ=255) tGTAGACCTGCTCAGGTTCACTCCTCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTCAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTtgt > 1:1639471/1‑150 (MQ=255) tGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcag < 2:622045/108‑1 (MQ=255) ccTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGttt < 2:2283781/150‑1 (MQ=255) cTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcaggagcaggagcaggag > 2:118907/1‑116 (MQ=255) cTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcaggagcaggagcaggag < 1:118907/116‑1 (MQ=255) cTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGATTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGtttt > 1:2131911/1‑150 (MQ=255) ggTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTg > 1:5682/1‑150 (MQ=255) gTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcaggagcaggagcag < 2:386616/105‑1 (MQ=255) gTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcaggagcaggagcag > 1:386616/1‑105 (MQ=255) gTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGa > 2:1838544/1‑150 (MQ=255) ttCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGaa > 1:1138733/1‑150 (MQ=255) tCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcaggagcaggagcaggagcaggagcag < 1:2122949/111‑1 (MQ=255) tCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTg < 1:2079050/137‑1 (MQ=255) tCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTg > 2:2079050/1‑137 (MQ=255) tCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGt > 2:879567/1‑150 (MQ=255) tCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGt > 1:1329969/1‑150 (MQ=255) cccATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGAc < 2:928258/64‑1 (MQ=255) cccATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGAc > 1:928258/1‑64 (MQ=255) cccATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcag > 2:2098299/1‑79 (MQ=255) cccATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcag < 1:2098299/79‑1 (MQ=255) cccATCAAACAGCACCGAGCTTTGCTATTTCAATCAAGAGCATCAAAGCCTATGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTAt > 2:370439/1‑150 (MQ=255) ccATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGAAGGAGCAGGAAAAATCAAATGCTTGTTGAATTTGACAGGGAAGGGGTAtg > 2:2059419/1‑150 (MQ=255) aTCGAACAGCAGCGGGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTGGGAGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTAtgtg > 2:1259026/1‑150 (MQ=255) aTCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTAtgtg > 1:1216644/1‑150 (MQ=255) tCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATgtgt < 1:1838544/150‑1 (MQ=255) aaaCAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCt > 1:1209476/1‑150 (MQ=255) aGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGaa > 2:2114236/1‑150 (MQ=255) ccGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcaggagcagga > 2:1187425/1‑79 (MQ=255) ccGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcaggagcagga < 1:1187425/79‑1 (MQ=255) cGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGa > 1:1847011/1‑150 (MQ=255) gAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATTTGTCTAGAAAATGaa < 1:879567/150‑1 (MQ=255) gAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGaa > 1:1316572/1‑150 (MQ=255) aGCTTTACTCTTTCAATCAAGAGCATCAAAACCATTGAGTCTTGGACCTTAAGCAAGATCATGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAg < 1:2059419/150‑1 (MQ=255) gCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGt < 1:2163761/150‑1 (MQ=255) tttGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTtg < 1:2329313/106‑1 (MQ=255) tttGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTtg > 2:2329313/1‑106 (MQ=255) gCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGAAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGACTAGAAAATGAAGTCCATc > 2:517619/1‑150 (MQ=255) gCTCTTTCAATCAAGAGAAACAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGTAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATc < 2:1639471/150‑1 (MQ=255) ctctTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCg > 2:145044/1‑150 (MQ=255) ctctTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCg < 2:1216644/150‑1 (MQ=255) tctTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCgg > 2:401980/1‑150 (MQ=255) tttCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAggg > 2:1185481/1‑119 (MQ=255) tttCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAggg < 1:1185481/119‑1 (MQ=255) tcctgctttaggTCAAAGCCCCAAAGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTgg < 2:1753467‑M1/87‑1 (MQ=255) tcctgctttaggTCAAAGCCCCAAAGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTgg > 1:1753467‑M1/13‑99 (MQ=255) tcctgctttaggTCAAAGCCCCAAAGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGa < 1:1987119‑M1/138‑1 (MQ=255) tgctttaggTCAAAGCCCCAAAGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTtgt < 1:915636‑M1/85‑1 (MQ=255) tgctttaggTCAAAGCCCCAAAGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTtgt > 2:915636‑M1/10‑94 (MQ=255) tcaaGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcaggagcaggagcaggag > 1:962875/1‑67 (MQ=255) tcaaGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTAtgt > 1:2327594/1‑119 (MQ=255) tcaaGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTAtgt < 2:2327594/119‑1 (MQ=255) tcaaGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCa > 1:368449/1‑150 (MQ=255) caaGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcaggagcaggagcag > 2:1667898/1‑63 (MQ=255) caaGAGCATCAAAGCCTTTGGGGCTTTGACCTAAagcaggagcaggagcaggagcaggagcag < 1:1667898/63‑1 (MQ=255) aggTCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTa < 2:837753‑M1/107‑1 (MQ=255) aggTCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTa > 1:837753‑M1/4‑110 (MQ=255) cATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTCGGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCAcg > 1:1776763/1‑150 (MQ=255) TCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCAcggg < 1:2277963‑M1/150‑1 (MQ=255) AGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCAcgggtcgg < 1:1030600‑M1/150‑1 (MQ=255) CCTTTGGGGCTTTGACCTAAAGCAGGAGCAGTAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCAcgggtcgggt > 2:1461874‑M1/1‑150 (MQ=255) CCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGaa < 1:1420398‑M1/118‑1 (MQ=255) CCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGaa > 2:1420398‑M1/1‑118 (MQ=255) CCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCAcgggtcgggt < 1:958779‑M1/150‑1 (MQ=255) CCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCAcgggtcgggt > 2:1209476‑M1/1‑150 (MQ=255) CTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGt < 1:2328760‑M1/67‑1 (MQ=255) CTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGt > 2:2328760‑M1/1‑67 (MQ=255) tttGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCAcg < 2:2236906/140‑1 (MQ=255) tttGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCAcg > 1:2236906/1‑140 (MQ=255) ggggCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTcc < 1:1488466/150‑1 (MQ=255) | ATCGATCGGTGGAAGGCTGAGGGAGGAAGGCACAAGCTGGCTTACTGAAAGCTCAGGGCTGCTCGGTTTGGCTGTAGACCTGCTCAGGTTCACTCCCCATCAAACAGCACCGAGCTTTGCTCTTTCAATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCC > NC_002947/4233348‑4233645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |