New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_LN832404	932185 =	0 (0.000)	8 (0.140)	8/400	NT	100%	intergenic (‑75/‑444)	EK12AG100_RS04715/EK12AG100_RS04720	aspartate:alanine antiporter/hypothetical protein
	?	NZ_LN832404	= 1472810	NA (NA)					coding (39/361 nt)	EK12AG100_RS07405	IS3‑like element IS2 family transposase

TTCCCATCGCGAAAAAAAATGGAAAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTTGGCCTAATAACAGCGATACGACTAAAACGCCAATGGAATTACCCAGTTGGATCGAACCAAGTCGTAACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGTTTATATTCACGGAGGCTAACTTCTTGTTTACTAGTAAGCTGTTGAAAGAAATGGTAATTTACGATAATGTTTTTTACCAGAATTCAGGGCGCAGA  >  NZ_LN832404/931923‑932444                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                    gcgctggagttctttaatctgcttcatggcggcagcaagttcagaggcaggaacaacctgttctccggcggcgacagcagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaacgtcatccacggttcaaagctctgcggaacaaatgagatattttcaggggtggtacgccgtatgcgtttctccggccctcagcaataacacatctgttatCAAATGAATAAGctaaaaaatagaatgacacat                                                                                                                                                                                                                                     <  2:696480‑M1/33‑11 (MQ=255)                                  agcaagttcagaggcaggaacaacctgttctccggcggcgacagcagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctcagccatcaataatctgttctCAAATGACTAGTATAAAAACTAGTCTTAAGACTATCAATTATTTAAGTGAATTTGGTTGtctgaag                                                                                                                                                                                                    <  2:43666‑M1/66‑4 (MQ=255)                                    caagttcagaggcaggaacaacctgttctccggcggcgacagcagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccggctgcgtttctccggccctaagacatcaatcatctgttcgCCAATGACTAGTCTAAAAACTAGGACTAAGACTAACAATTATTTAAGGGatattggttgattggaaat                                                                                                                                                                                                  <  2:210822‑M1/68‑10 (MQ=255)                                           agaggcaggaacaacctgttctccggcggcgacagcagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggcactaagacatcaatcatatgttctCCAATGACTAGTCTAACAACACGGATTAAGACTCTCACTTATTTAATGTATtttggttgtctgggttttcaggtg                                                                                                                                                                                           <  2:376032‑M1/75‑12 (MQ=255)                                                                         gacagcagtaagacttccttcctggtattgctgacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGcc                                                                                                                                                             >  2:46336‑M1/191‑295 (MQ=255)                                                                              cagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAgc                                                                                                                                                        >  1:500650‑M1/186‑295 (MQ=255)                                                                                               tggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAACAACTAGTATTAAGTCTATCCCTTATTTCAGTTATATTGGTTGTCTGTCTATTCAGGGGGCCATTCTAGTAACTTTCCGATACCTAGCCCAACCCCTAGTACCCCAcataa                                                                                                                                       <  2:692684‑M1/127‑1 (MQ=255)                                                                                                                                                                             ggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGTTTATATTCACGGAGGCTAACTTCTTGTTTACTAGTAAGCt                                                         <  2:256658‑M1/205‑1 (MQ=255)                                                                                                                                                                                                    tgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCAAAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGTTTATATTAAAGGTGGCTAACTTCTTGTTTACTAGTAAGCTGTTGAAAGAAATGGTAATTTACg                                  <  2:647541‑M1/228‑1 (MQ=255)                                                                                                                                                                                                     gcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGTTTATATTCACGGAGGCTAACTTCTTGTTTACTAGTAAGCTGTTGAAAGAAATGGTAATTTACGa                                 >  1:340934‑M1/67‑295 (MQ=255)                                                                                                                                                                                                                              gtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGTTTATATTCACGGAGGCTAACTTCTTGTTTACTAGTAAGCTGTTGAAAGAAATGGTAATTTACGATAATGTTTTTTACCAGAATTCAggg        <  1:133194‑M1/254‑1 (MQ=255)                                                                                                                                                                                                                                    gtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGTTTATATTCACGGAGGCTAACTTCTTGTTTACTAGTAAGATGTTGAAAGAAATGGTAATTTACGATAATGTTTTTTACCAGAATTCAGGGCGCAGa  <  2:495585‑M1/260‑1 (MQ=255)                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                    TTCCCATCGCGAAAAAAAATGGAAAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTTGGCCTAATAACAGCGATACGACTAAAACGCCAATGGAATTACCCAGTTGGATCGAACCAAGTCGTAACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGTTTATATTCACGGAGGCTAACTTCTTGTTTACTAGTAAGCTGTTGAAAGAAATGGTAATTTACGATAATGTTTTTTACCAGAATTCAGGGCGCAGA  >  NZ_LN832404/931923‑932444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.