Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	NZ_LN832404	2,523,883	Δ120 bp	100%		[EK12AG100_RS12585]	[EK12AG100_RS12585]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_LN832404	2523883	2524002	120	54 [1]	[1] 54	[EK12AG100_RS12585]	[EK12AG100_RS12585]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_LN832404	= 2523882	1 (0.010)	39 (0.640)	38/416	NT	99.1%	noncoding (76/76 nt)	EK12AG100_RS12580	tRNA‑Val
	?	NZ_LN832404	2524003 =	0 (0.000)					intergenic (+1/‑46)	EK12AG100_RS12585/EK12AG100_RS12590	tRNA‑Val/tRNA‑Val

ATCCTGGAAAAATTAAGTGGGCGATATTCTATCACTCCCGCCTGATTCCTCAATGTAGTTCGGGTTTCTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT  >  NZ_LN832404/2523589‑2524171                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                                  aTCCTGGAAAAATTAAGTGGGCGATATTCTATCACTCCCGCCTGATTCCTCAATTTAGTTCGGGTTTCTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAc                                                                                                                                                                                                                                                                                                  <  1:517935‑M1/295‑2 (MQ=255)  tCCTGGAAAAATTAAGTGGGCGTTATTCAATCACTCCCGGTGGATTCCTCAATGTAGTTCGGGTTTCTACCTTACGCATTATGGTTGTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAct                                                                                                                                                                                                                                                                                                 <  2:312503‑M1/295‑3 (MQ=255)       gAAAAATTAATTGGGCGATATTCTATCACTCCCGCCGGATTCCTGAATGTATGTCGTGTTTCTACCTTACGCATTATTGTGTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctc                                                                                                                                                                                                                                                                                            <  2:734287‑M1/295‑8 (MQ=255)       gAAAAATTAAGTGGGCGATATTCTATCACTCCCGCCTGATTCCTCAATGTAGTTCGGGTTTCTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTCGAAAATGCGTTGACTCCTTTTGAACTCTCCCTATAATGCAACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGACCACCTCCCTTACAAGGAGGGGGGAGGCGGTTCGATCCCGTCATCACCCACCActtcaca                                                                                                                                                                                                                                                                                            >  2:721788‑M1/1‑288 (MQ=255)         aaaaTTAAGTGGGCGATATTCTATCACTCCCGCCTGATTCCTCAATGTAGTTCGGGTTTCTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCCCCActttctcgc                                                                                                                                                                                                                                                                                          >  1:267930‑M1/1‑286 (MQ=255)           aaTTAAGTGGGCGATATTCTATCACTCCCGCCTGATTCCTCAATGTAGTTCGGGTTTCTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgcca                                                                                                                                                                                                                                                                                        <  1:669992‑M1/295‑12 (MQ=255)            aTTAAGTGGGCGATATTCTATCACTCCCGCCTGATTCCTCAATGTAGTTCGGGTTTCTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccag                                                                                                                                                                                                                                                                                       <  1:215860‑M1/295‑13 (MQ=255)             ttAAGTGGGCGATATTCTATCACTCCCGCCTGATTCCTCAATGTAGTTCGGGTTTCTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCAACCActttctcgccagc                                                                                                                                                                                                                                                                                      >  1:211946‑M1/1‑282 (MQ=255)             ttAAGGGGGGGCTATTTCATCACGCCCGCCTGATTCCTCAAGGGAGGTCGGGGTTCGACCTTTCGGATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagc                                                                                                                                                                                                                                                                                      <  2:343542‑M1/295‑14 (MQ=255)               gaggtggCTATATTCTATCACTCCCGCCTGATTCCTCAATGTAGTTCGGGTTTCTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGt                                                                                                                                                                                                                                                                                    <  2:53115/290‑1 (MQ=255)                             cTATCACTCCCGCCTGATTCCTCAATGTAGTTCGGGTTTCTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGCGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctcaatttcttgtaaca                                                                                                                                                                                                                                                                      >  1:452730‑M1/1‑266 (MQ=255)                                        gCCTGATTCCTCAATGTAGTTCGTGTTTCGACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtac                                                                                                                                                                                                                                                           <  1:675707‑M1/295‑41 (MQ=255)                                                    aaTGTAGTTCGGGTTTCTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtga                                                                                                                                                                                                                                               >  2:142554‑M1/1‑243 (MQ=255)                                                     aTGTAGTTCGGGTTTCTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgat                                                                                                                                                                                                                                              <  1:142554‑M1/295‑54 (MQ=255)                                                      tGTAGTTCGGCGTTCTACCTTACGCATTATTGGTTTCGTTGACAAATTGCGCAACACGGTCTTTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgatt                                                                                                                                                                                                                                             <  2:212805‑M1/295‑55 (MQ=255)                                                       gTAGTTCGGGTTTCTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACTCGGTCTGTTTTTCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgatta                                                                                                                                                                                                                                            <  1:292116‑M1/295‑56 (MQ=255)                                                       gTAGTTCGGGTTTCTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgatta                                                                                                                                                                                                                                            <  1:466300‑M1/295‑56 (MQ=255)                                                         aGTTCGGGTTTCTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtg                                                                                                                                                                                                                                                >  1:216965‑M1/1‑238 (MQ=255)                                                         aGTTCGGGTTTCTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtg                                                                                                                                                                                                                                                <  2:216965‑M1/289‑52 (MQ=255)                                                            tCGGGTTTCTCCCGTCCGCAGTATTGTTTTCGTTGACAAATTGCGCTACACGGTCTGTGTTGCGATCATCTTGCTTTAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctca                                                                                                                                                                                                                                       <  2:211946‑M1/295‑61 (MQ=255)                                                                    cTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcctgtaaacatgtgaactaccgacgtgggtgattagctcggatggggt                                                                                                                                                                                                                               >  2:308248‑M1/1‑227 (MQ=255)                                                                     tACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggaga                                                                                                                                                                                                                              <  1:485389‑M1/295‑70 (MQ=255)                                                                       ccTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagc                                                                                                                                                                                                                            >  1:138467‑M1/1‑224 (MQ=255)                                                                                   ttGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttaca                                                                                                                                                                                                                >  1:139202‑M1/1‑212 (MQ=255)                                                                                      ttttCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttcccgcctgcgcactgtcttgtaaacatgttaagtaccgaagagggttattaggttagctggcaggccacctcccctacaagg                                                                                                                                                                                                             >  2:568546‑M1/1‑209 (MQ=255)                                                                                           gTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggg                                                                                                                                                                                                        <  1:685991‑M1/295‑92 (MQ=255)                                                                                             tGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCCCCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggt                                                                                                                                                                                                      >  2:551737‑M1/1‑202 (MQ=255)                                                                                                     ttcgcaaCACGGTCTGGTTTGCTATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCTTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggtt                                                                                                                                                                                              <  1:499947‑M1/293‑102 (MQ=255)                                                                                                            tacgGTCTGTGTTGCGATAATCTTGCTTAAATTTACGACGATCGAACAATGACTTTAGAAAATGCGGTGACTCATGTTGAACTTGTCCTATAAGGCGACTCCACACA‑GCGGGGGGGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgacagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatccc                                                                                                                                                                                       <  2:759748‑M1/294‑109 (MQ=255)                                                                                                            cacGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGAACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatacc                                                                                                                                                                                       >  1:755413‑M1/1‑187 (MQ=255)                                                                                                                                       tAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgtta                                                                                                                                                            <  1:186093‑M1/295‑136 (MQ=255)                                                                                                                                             tACGTCGATCGAACAATTTCTTTCGAAAATGCGTTTACTCATTTTGAACTCGCCCTATAATTCGACTCCACACA‑GCGGGTGTGATTAGCTCGGCTGGGAGTGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcag                                                                                                                                                      <  1:120831‑M1/295‑142 (MQ=255)                                                                                                                                                                cTTTAGAAAATTCGGTGACTCATGTTGCACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagttgactt                                                                                                                                   <  1:319987‑M1/295‑161 (MQ=255)                                                                                                                                                                 ctatgaaaaTGCGTTGACTCATTTTGAACCTGCCCTATAATGCAACTCCTCACAGGCGGGGGT‑AGTAGCGCAGCTGGGATAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttggaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagttgacttt                                                                                                                                  <  2:452730‑M1/291‑162 (MQ=255)                                                                                                                                                                     gAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctccccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttaccaggagggggtcggcggttcgctcccgtcctcacccaccacttccgctccttcgcccagttggtagggccgtgtacctttcat                                                                                                                              >  2:382001‑M1/1‑130 (MQ=255)                                                                                                                                                                            cGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagatgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagtagacttttcatcacttag                                                                                                                       >  1:447980‑M1/1‑123 (MQ=255)                                                                                                                                                                              ttGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctcaatttcttgtaaaaatgtgacgtaccacagtgggttattagctcagctgggagagcacctcccttacatggaaggggtcggcggttccatcccgtcacccccccccactcccggtcgatcgccccgacgggagagcgtttgccttttattcacttggtc                                                                                                                     >  2:607163‑M1/1‑121 (MQ=255)                                                                                                                                                                                      ttttGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttc                                                                                                             >  1:363452‑M1/1‑113 (MQ=255)                                                                                                                                                                                         tGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaa                                                                                                          >  1:664809‑M1/1‑110 (MQ=255)                                                                                                                                                                                          gAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagttgacttttaatcatttgttcgcaggtccgaat                                                                                                         >  1:1625‑M1/1‑109 (MQ=255)                                                                                                                                                                                                  ccTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaactttcgtgtgagcatgtgaagtaccgacgtgggtgcttagctccgctgggagagcacctcccttacaaggagggggtcggcggttcgatcgcgtcatcacccacacctccgggtcgttcgctcagttggtatagcagttgacttttactccattgctcgcaggtccgactcctgcacg                                                                                                 >  2:100240‑M1/1‑101 (MQ=255)                                                                                                                                                                                                     ataATGCGACTCCCCACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTAAAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacc                                                                                              <  1:100240‑M1/295‑198 (MQ=255)                                                                                                                                                                                                     ataATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtagttagcccagttggtagagcagttgacttttaatcaattggtcgcaggttcgaaccctgcacgacc                                                                                              >  1:757101‑M1/1‑98 (MQ=255)                                                                                                                                                                                                                            gggTGATTAGCTCAGCTGGGAGAGCACTTCCCTTACAAGGAGGGGGTCGGCGTTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatgtaaaaaagcgccct                                                                        <  1:202470‑M1/295‑220 (MQ=255)                                                                                                                                                                                                                                       tCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaactttcttgtaaacatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtcgagcagttgacttttcatcaattggtcgcaggttcgactcctgcccgccccacgcatgtacaaaatcgccctcaatgccctgt                                                             >  2:648800‑M1/1‑65 (MQ=255)                                                                                                                                                                                                                                         aGCTTGGAGAGCCCCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatgtaaaaaagcgccctaaaggcgcttttt                                                           <  1:568546‑M1/295‑233 (MQ=255)                                                                                                                                                                                                                                         aGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatgtaaaaaagcgccctaaaggcgcttttt                                                           >  1:663903‑M1/1‑63 (MQ=255)                                                                                                                                                                                                                                               gagaGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcaactcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatgtaaaaaagcgccctaaaggcgcttttttactat                                                     <  1:258479‑M1/295‑239 (MQ=255)                                                                                                                                                                                                                                                 gagCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatgtaaaaaagcgccctaaaggcgcttttttactatct                                                   <  1:551737‑M1/295‑241 (MQ=255)                                                                                                                                                                                                                                                     aCCTCCCTTACAGGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatgtaaaaaagcgccctaaaggcgcttttttactatctgcga                                               <  1:607163‑M1/295‑245 (MQ=255)                                                                                                                                                                                                                                                      cctcctgtatctgtagggggtcggcggtccgATCCCGTCATCGCCAACCActttttcgccagctgactttcttgaaaaaatgtggagtcacgaagggggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatgtaaaaaagcgccctaaaggcgcttttttactatctgcgat                                              <  2:139202‑M1/281‑246 (MQ=255)                                                                                                                                                                                                                                                                  ggaggGGGTCGGCGGTTCGATCCCGTCATCACCCACCActttctcgccagctaaagttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattc                                  <  1:335138‑M1/295‑258 (MQ=255)                                                                                                                                                                                                                                                                                    gATCCCGTCATCACCCACCActttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgactcctgcacgacccaccaatgtaaacaagcgccctacagccgcttttttcctatctgcgatattaaaacattcgaacctgcaccgggtttg                >  2:606307‑M1/1‑20 (MQ=255)                                                                                                                                                                                                                                                                                                  ccaccactttctcgccagctaaatttcttgtaaaaatgtgaagtaccgaagtgggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccacttcgggtcgttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcctgcacgacccaccaatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattcgatcctgcagcaggtttgagttgagcgcagcg  <  1:577264‑M1/295‑290 (MQ=255)                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                                  ATCCTGGAAAAATTAAGTGGGCGATATTCTATCACTCCCGCCTGATTCCTCAATGTAGTTCGGGTTTCTACCTTACGCATTATTGTTTTCGTTGACAAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACA‑GCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT  >  NZ_LN832404/2523589‑2524171

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑