New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_LN832404	932185 =	0 (0.000)	17 (0.220)	16/390	NT	100%	intergenic (‑75/‑444)	EK12AG100_RS04715/EK12AG100_RS04720	aspartate:alanine antiporter/hypothetical protein
	?	NZ_LN832404	= 1472810	NA (NA)					coding (39/361 nt)	EK12AG100_RS07405	IS3‑like element IS2 family transposase

AAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTTGGCCTAATAACAGCGATACGACTAAAACGCCAATGGAATTACCCAGTTGGATCGAACCAAGTCGTAACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGTTTATATTCACGGAGGCTAACTTCTTGTTTACTAGTAAGCTGTTGAAAGAAATGGTAATTTACGATAATGTTTTTTACCAGAATTCAGGGCGCAGATTCATTCAGCGCACCTAAACGATAGTAAAG  >  NZ_LN832404/931980‑932474                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                                  ctgttctccggcggcgacagcagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtttggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCCCTTATTTACGTGAAATTGTTTGTCTGGAGATTACGGGGGCCCGTCTAg                                                                                                                                                                                                               <  2:344525‑M1/85‑1 (MQ=255)  tgttctccggcggcgacagcagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGt                                                                                                                                                                                                              <  1:965212‑M1/86‑1 (MQ=255)   gttctccggcggcgacagcagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTa                                                                                                                                                                                                             <  2:474201‑M1/87‑1 (MQ=255)    ttctccggcggcgacagcagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTaa                                                                                                                                                                                                            >  1:473433‑M1/203‑290 (MQ=255)                            acttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAgcgc                                                                                                                                                                                    >  1:474201‑M1/179‑290 (MQ=255)                               tccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAg                                                                                                                                                                                 <  1:457950‑M1/115‑1 (MQ=255)                                          attgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGCTATTGGTTGTCTGGAATTTCAGGGGGCCAGTCTAGACACTCTCCGAGGCATCGCCCAATCGCGaggaccaccactc                                                                                                                                                                      <  2:457909‑M1/126‑6 (MQ=255)                                                 aggccagggaattacctggctgccttctaccccatgtttccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAg                                                                                                                                                               >  2:746980‑M1/158‑290 (MQ=255)                                                            agagctggctgggcgcgaaaccatgttgccggtcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTcc                                                                                                                                                    >  2:351144‑M1/147‑290 (MQ=255)                                                                          gctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCg                                                                                                                                      >  1:1051650‑M1/133‑290 (MQ=255)                                                                            tacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGc                                                                                                                                    <  1:14840‑M1/160‑1 (MQ=255)                                                                                 catgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGt                                                                                                                               <  1:233389‑M1/165‑1 (MQ=255)                                                                                                  ggggagaccgccatccccggttcaaagccttgctgaacaattgcgatcttttccggtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGTTTATATTCACGGAGGCt                                                                                                              >  2:299286‑M1/109‑290 (MQ=255)                                                                                                            tcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATCATAACAGACTGTAATTCCCATTTAACAATTCGGCAGCGTTTATATTCCAGGAGggtaacttttgtt                                                                                                    <  2:335557‑M1/192‑6 (MQ=255)                                                                                                                       caaagtgtctgttgaccagtttggatatttgcctggtgggtaagccgactgcgtgtgtccggccctatgacatcaatcatatgttctCCAATGACTAGTTTAAAAACTAGTATTAAGACTAGCACTTATTGAATGGATATTGGTTGTCTTGGGATTCAGGGGGCCAGTCTAGTATCTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGTTTATATTCACGGAGGCTAACTTCTTGTTTACTAGTAAg                                                                                         >  2:616765‑M1/88‑290 (MQ=255)                                                                                                                                        aattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACACACAATAACAGAATGTAATTCCCATTTAACATTTCGGCGACGTTTATATTCAAGGAGTCTAACTTCTTTGTTCTTAGTAATCTGTTGAACGACATGGt                                                                        <  2:431192‑M1/220‑1 (MQ=255)                                                                                                                                        aattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATACTAACAGAATGTAATTCCCATTTAACCATTCGGCGACGTTTATATTCACGGTGGCTAACTTCTTCTTTACTGGTAAGCTGTTTAAAGACATGGt                                                                        <  2:431155‑M1/220‑1 (MQ=255)                                                                                                                                                           gtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGTTTATATTCACGGAGGCTAACTTCTTGTTTACTAGTAAGCTGTTGAACGAAATGGTAATTTACGATAATGttttt                                                     <  1:151939‑M1/239‑1 (MQ=255)                                                                                                                                                                                 ccgtccctaagacatcgatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCAATGATTTAAGTGATATTGGGTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGTTTATATTCACGGAGGCTAACTTCTTGTTTACTAGTAAGCTGTTGAAAGAAATGGTAATTTACGATAATGTTTTTTACCAGAATTCAGGGCGCAGat                               >  2:127667‑M1/30‑290 (MQ=255)                                                                                                                                                                                    gccctaagacatcaatcagctgttctCCAATGAATAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGCCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGTTTATATTCACGGAGGCTAACTTCTTGTTTACTAGTAAGCTGTTGAAAGAAATGGTAATTTACGATAATGTTTTTTACCAGAATTCAGGGCGCAGattca                            >  1:958888‑M1/27‑290 (MQ=255)                                                                                                                                                                                          agacatcaatcatctgttctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGTTTATATTCACGGAGGCTAACTTCTTGTTTACTAGTAAGCTGTTGAAAGAAATGGTAATTTACGATAATGTTTTTTACCAGAATTCAGGGCGCAGATTCATTCAgc                      >  1:732729‑M1/21‑290 (MQ=255)                                                                                                                                                                                                           tctCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGACTGTCACTCCAATTTAACAATTCGGCGACGTTTATATTCACGGAGGCTAACTTCTTGTTTACTAGTAAGTTGATGAAAGAAATGATAATTTAAGCTAATGTTTTTTACAAGAATTAAGGGCGCCGACTCATTCagcgaaactaaccgctcgta     <  2:311355‑M1/287‑10 (MQ=255)                                                                                                                                                                                                              CCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGTTTATATTCACGGAGGCTAACTTCTTGTTTACTAGTAAGCTGTTGAAAGAAATGGTAATTTACGATAATGTTTTTTACCAGAATTCAGGGCGCAGATTCATTCAGCGCACCTAAACGATagtaaag  <  2:347808‑M1/290‑1 (MQ=255)                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                                  AAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTTGGCCTAATAACAGCGATACGACTAAAACGCCAATGGAATTACCCAGTTGGATCGAACCAAGTCGTAACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTAACTTTCCGAGACATAGCCCAAGCGCGAGGACCACAAATAATAACAGAATGTAATTCCCATTTAACAATTCGGCGACGTTTATATTCACGGAGGCTAACTTCTTGTTTACTAGTAAGCTGTTGAAAGAAATGGTAATTTACGATAATGTTTTTTACCAGAATTCAGGGCGCAGATTCATTCAGCGCACCTAAACGATAGTAAAG  >  NZ_LN832404/931980‑932474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.