Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC	NZ_LN832404	1,238,733	Δ84 bp	100%	coding (1071‑1154/1335 nt)	EK12AG100_RS06230 →	NADP‑dependent isocitrate dehydrogenase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_LN832404	1238817 =	0 (0.000)	31 (0.380)	24/396	NT	100%	coding (1155/1335 nt)	EK12AG100_RS06230	NADP‑dependent isocitrate dehydrogenase
	?	NZ_LN832404	= 1238732	0 (0.000)					coding (1070/1335 nt)	EK12AG100_RS06230	NADP‑dependent isocitrate dehydrogenase

CAGATCCTGCTGCGTCCGGCTGAATATGATGTTATCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATCTCTCCGCTGAGATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCG  >  NZ_LN832404/1238524‑1239078                                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                      ggtggcccgtggctgaaagttaaaaacccgaacactggcaaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatt                                                                                                                                                                                                                                                                       <  1:1024303‑M1/1‑1 (MQ=255)      cccgtggctgaaagttaaaaacccgaacactggcaaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattattctctc                                                                                                                                                                                                                                                                  <  1:467588‑M1/6‑1 (MQ=255)         gtggctgaaagttaaaaacccgaacactggcaaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGc                                                                                                                                                                                                                                                               >  1:391310‑M1/286‑294 (MQ=255)          tggctgaaggttaaaaacccgaaccttggcaaagagagggtcagtaaagacgggattgctgaggctatcctgcaacagatcctggtgggtccgggtgaatatgatggtatcgccggtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCt                                                                                                                                                                                                                                                              >  2:211211‑M1/285‑294 (MQ=255)           gtctgaaaggtacaaaccagaaacttggacaagatatcgttttaaaagtcgtgagtgctgagccattcctgcaacatgtcctgttgggtccggctgaatatgaggttagcgcctggatgaacctgaacggtgactacagttctgacgccctggcagcgcaggtgggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTg                                                                                                                                                                                                                                                             >  2:661332‑M1/284‑294 (MQ=255)           ggctgaaagttaaaaacccgaacactggcaaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTg                                                                                                                                                                                                                                                             >  1:420076‑M1/284‑294 (MQ=255)               gaaagttaaaaacccgaacactggcaaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAgat                                                                                                                                                                                                                                                         >  1:975397‑M1/280‑294 (MQ=255)                aaagttaaaaacccgaacactggcaaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAgatg                                                                                                                                                                                                                                                        <  1:517376‑M1/16‑1 (MQ=255)                    ttaaaaacccgaacactggcaaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGAtgc                                                                                                                                                                                                                                                    <  1:367073‑M1/20‑1 (MQ=255)                    gtaaaaacccgaacactggcaaagagatcgtcattaaagccgtgattgcggatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgacgacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGAtgc                                                                                                                                                                                                                                                    >  2:852065‑M1/275‑294 (MQ=255)                      aaaaacccgaacactggcaaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcacacatcggtgacgaatgcgccctgtttgaagccacccacgctactccgccgaaatatgccggccaggacaaagtaaatcctggctctattatTCTCTCCgcggagttgagcctg                                                                                                                                                                                                                                                  <  2:989930‑M1/22‑6 (MQ=255)                       aaaacccgaacactggcaaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGAtgctgc                                                                                                                                                                                                                                                 <  1:935517‑M1/23‑1 (MQ=255)                       aaaacccgaacactggcaaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtaaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGAtgctgc                                                                                                                                                                                                                                                 <  1:145167‑M1/23‑1 (MQ=255)                       aaaaacacaaacctggaaaagagatcgtgattaaagcatggatggctgatgcagtccggcaacagatcctgctgcggccggcggaatatgatgtgatcgcctgtaggaacctgaacggtgactacatgtctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGAtgctgc                                                                                                                                                                                                                                                 >  2:872998‑M1/272‑294 (MQ=255)                          acccgaacactggcaaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccaccaccggtactgcgccgaaatatgccggtcaggacaaagtaaatcatggctccattatTCTCTCCGCTGCGATGATGCTGCGcc                                                                                                                                                                                                                                              <  1:581582‑M1/26‑1 (MQ=255)                              gaacactggcaaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCatat                                                                                                                                                                                                                                          >  1:737723‑M1/265‑294 (MQ=255)                              gaacactggcaaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatactggctctattatTCTCTCCGCTGAGATGATGCTGCGCCatat                                                                                                                                                                                                                                          <  1:282509‑M1/30‑1 (MQ=255)                                acactggcaaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCATATgg                                                                                                                                                                                                                                        >  1:873692‑M1/263‑294 (MQ=255)                                   ctggcaaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGtt                                                                                                                                                                                                                                     >  1:354988‑M1/260‑294 (MQ=255)                                    tggcaaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTg                                                                                                                                                                                                                                    >  1:697493‑M1/259‑294 (MQ=255)                                       caaagagatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgagacctgtttgaagccacccacggtactgcgccgaaatctgccggtcaggaaacagtaaatcctggctctattatACTCTCCGCAGAGATGATGCTGCGTCACATGGGTTGGAc                                                                                                                                                                                                                                 <  2:744917‑M1/39‑1 (MQ=255)                                        acgtgagtcgtcatttaagacgtgatgccggatgtgttcctgcaactggtcctgctgcgtccggctgactatgatgttatcgcctgtattaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGacc                                                                                                                                                                                                                                >  2:348335‑M1/255‑293 (MQ=255)                                            agatcgtcattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAg                                                                                                                                                                                                                            <  1:141126‑M1/44‑1 (MQ=255)                                                   cattaaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGa                                                                                                                                                                                                                     >  1:69005‑M1/244‑294 (MQ=255)                                                      taaatacggagttgctgatgcattcctgcaacagagccggcggggtccggcggaagatgatgttatcgcctgtaggaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTgactt                                                                                                                                                                                                                  >  2:686116‑M1/241‑292 (MQ=255)                                                      taaagacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGAACGAAGCGGCTGACCt                                                                                                                                                                                                                  <  1:803365‑M1/54‑1 (MQ=255)                                                      taaagacgtgagtgctgatgcattcctgcaacagagcctgctgagtccggctgatgaggatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCt                                                                                                                                                                                                                  >  2:1058709‑M1/241‑294 (MQ=255)                                                       aaagacgtgagttcggatgcattcctgcaacagatcctgctgcggccggctgaatagtatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCtgactta                                                                                                                                                                                                                 >  2:472774‑M1/240‑291 (MQ=255)                                                        aggccgtgtttccttatgccttccttcaacagttcctgctgcgtccggctgaatatgatgttatcgcctgtattatcctgaacggtgactccatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGa                                                                                                                                                                                                                >  2:202672‑M1/239‑294 (MQ=255)                                                          gacgtgattgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCggctgacttaatt                                                                                                                                                                                                              <  1:889513‑M1/58‑7 (MQ=255)                                                            cgtgattgctgatgcattcctggaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggccctattatTCTCTCCGCTGAGCTGATGCTGCGCCACCTGGGTTggaccgaagcggccggcttaatttt                                                                                                                                                                                                            <  2:272768‑M1/60‑13 (MQ=255)                                                                attgctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTaaa                                                                                                                                                                                                        >  1:472577‑M1/231‑294 (MQ=255)                                                                    ctgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTa                                                                                                                                                                                                    >  1:203251‑M1/227‑294 (MQ=255)                                                                     tgatgcattcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTAt                                                                                                                                                                                                   >  2:517376‑M1/226‑294 (MQ=255)                                                                           attcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAgg                                                                                                                                                                                             >  1:90777‑M1/220‑294 (MQ=255)                                                                             tcctgcaacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACCTGGGTTGGACCGAAGCGGCTGCCTTAATTGTTAaaggtatgtaggggg                                                                                                                                                                                           <  2:500239‑M1/77‑8 (MQ=255)                                                                              cctgcaacggatccgtgtgcctccggcgtaatatgaggttagcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcgttgacgaatgcgccctgtgtgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGgcgc                                                                                                                                                                                          >  2:840947‑M1/217‑294 (MQ=255)                                                                                  caacagatcctgctgcgtccggcttaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgcccttgcatcgcaggttggcggtatcggtatcgcccctggtgcaaacatctgtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACTTGATTGTTAAAGGTATGGAAGGCGcaatc                                                                                                                                                                                      >  1:794576‑M1/213‑294 (MQ=255)                                                                                  caacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGcaatc                                                                                                                                                                                      <  1:963112‑M1/82‑1 (MQ=255)                                                                                   aacagatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaaacctggatctattatTCTCTCCGCTGAGATGATGCTGCGACATATGGGTTGGACTGAAGCGGCTGACCTGAAGGTTAAAGGTAGGGAAGGAGaaatca                                                                                                                                                                                     <  2:972221‑M1/83‑1 (MQ=255)                                                                                       gatcctgctgcgtccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGc                                                                                                                                                                                 >  1:523427‑M1/208‑294 (MQ=255)                                                                                                    ccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaactatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGCTGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCTCAATCAACGCGAAAACcgtaccc                                                                                                                                                                    <  2:268758‑M1/100‑4 (MQ=255)                                                                                                    ccggctgaatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAacc                                                                                                                                                                    >  2:367073‑M1/195‑293 (MQ=255)                                                                                                           aatatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattctTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGCAGCGGCTGACTTAATTGTTAAATGTATGGAAGGCGCAATAAAcgcgaaaaccgtcacctttgcat                                                                                                                                                             <  2:198684‑M1/107‑12 (MQ=255)                                                                                                            atatgatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACtt                                                                                                                                                            <  1:318953‑M1/108‑1 (MQ=255)                                                                                                                gatgttatcgcctgtatgaacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAAGCAACGCGAAAACCGTAACCTATGACTTCgag                                                                                                                                                        <  1:252726‑M1/112‑2 (MQ=255)                                                                                                                      atctcctaactgcacctgatctgggactacctttcttgcgccctgcgagcgcaggttggcggtatcggtttcgcccctgttgcaaacatcgttgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTg                                                                                                                                                  >  2:173022‑M1/177‑294 (MQ=255)                                                                                                                           ctgtatgcacctgaacggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGa                                                                                                                                             <  1:615135‑M1/123‑1 (MQ=255)                                                                                                                                           ggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAActgctg                                                                                                                             <  1:545454‑M1/139‑1 (MQ=255)                                                                                                                                           ggtgactacatttctgacgccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAActgctg                                                                                                                             <  1:762405‑M1/139‑1 (MQ=255)                                                                                                                                                ctgcatgtcggacgccctggcagcgcaggttggcggtatcgggagcgccccttgtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATg                                                                                                                        >  2:398504‑M1/151‑294 (MQ=255)                                                                                                                                                    atttctgacgcccgggtagcgcggtttggcgggatcggtatcgcccctggtgcaaacatcggtgacgaatgctccctgtttgaagccccccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCa                                                                                                                    >  1:509767‑M1/147‑294 (MQ=255)                                                                                                                                                             gccctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAActgctgaaatgttaacggtttgtt                                                                                                           <  2:264629‑M1/157‑12 (MQ=255)                                                                                                                                                               cctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGCCTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGGAAACCGCAACCTATGCCTTCGAGCGTCTGATGGATTGCGCTAAACTGCTTAAATGGTCAGAGTTTGGTGa                                                                                                         <  2:164326‑M1/159‑1 (MQ=255)                                                                                                                                                               cctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGa                                                                                                         >  1:277341‑M1/136‑294 (MQ=255)                                                                                                                                                               cctggcagcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggggacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGa                                                                                                         >  2:92879‑M1/136‑294 (MQ=255)                                                                                                                                                                     agcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCCACGAGAAAACCGTAACCTATGACTTCGAGCGTCAGATGGATGGAGATAAAAGGCCGAAAAGTTCAGGGTtaggtgacgggtt                                                                                                   <  2:496019‑M1/165‑7 (MQ=255)                                                                                                                                                                     agcgcaggttggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGat                                                                                                   <  1:507193‑M1/165‑1 (MQ=255)                                                                                                                                                                      gcgcagggtggcgggaacggagtcacccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGatc                                                                                                  >  2:354976‑M1/129‑294 (MQ=255)                                                                                                                                                                         cggggtggcggtttcggtatagcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGatcatc                                                                                               >  2:179175‑M1/126‑294 (MQ=255)                                                                                                                                                                              tggcggtatcggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCTAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGaaaa                                                                                          >  2:360323‑M1/121‑294 (MQ=255)                                                                                                                                                                                       cggtatcgctccgggggcaaaatacggggacgaatgcgccctgtttgaagccacacacggtacgtcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGAGGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAAtc                                                                                 >  2:282509‑M1/112‑294 (MQ=255)                                                                                                                                                                                       cggtatcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAatg                                                                                 >  1:602285‑M1/112‑293 (MQ=255)                                                                                                                                                                                           atcgcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGCTGGCGCTAAACTGCTGCAATGTTCAGAGTTTGGTGACGCGATCCTCGAAAatgtgtaaagccgt                                                                             <  2:441482‑M1/187‑7 (MQ=255)                                                                                                                                                                                              gcccctggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGAAATCAACGCGAAAACCGTAACATATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAAATGTAAGAGTTTGGAGAAGGGATCCacgaaaacatgttcagcggtagt                                                                          <  2:109375‑M1/190‑12 (MQ=255)                                                                                                                                                                                                   tggtgcaaacatcggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATcgaaaacatgtaatgccgtagtttgtt                                                                     >  1:744917‑M1/100‑281 (MQ=255)                                                                                                                                                                                                               cggtgacgaatgcgccctgtttgaagccacccacggtactgctccgaaatatgccggtcaggacaaagtaaatccttgctctattatTCTCTCCGCTGAGATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAAc                                                         >  1:957189‑M1/88‑294 (MQ=255)                                                                                                                                                                                                                ggtgacgaatgcgccctgtttgaagccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTACATATTGAAACg                                                        <  1:653752‑M1/208‑1 (MQ=255)                                                                                                                                                                                                                                       agccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAAATGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGCTCCCGTTGttt                                 >  1:757245‑M1/64‑294 (MQ=255)                                                                                                                                                                                                                                         ccacccacggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTTTGTTAAATTTATTAACGGGAGCGTAACGCTCCCGTTgttttt                               <  1:901815‑M1/233‑2 (MQ=255)                                                                                                                                                                                                                                               acggtactgcgccgaaatatgccggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTAtg                         >  1:132463‑M1/56‑294 (MQ=255)                                                                                                                                                                                                                                                                      ggtcaggacaaagtaaatcctggctctattatTCTCTCCGCTGAGATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCg  <  1:819451‑M1/262‑1 (MQ=255)                                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                      CAGATCCTGCTGCGTCCGGCTGAATATGATGTTATCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTATTATTCTCTCCGCTGAGATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATCTCTCCGCTGAGATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCG  >  NZ_LN832404/1238524‑1239078

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.