New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4325848 =	NA (NA)	26 (0.160) +GGTGCCGAC	7/412	12.2	NA	noncoding (47/583 nt)	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913	= 4326338	NA (NA)					noncoding (537/583 nt)	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4326090‑4325848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCTGATGCG‑ACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTAC  <  NC_000913/4326338‑4326102                                                                                                                                                                                                                                                    |||||||||                                                                                                                                                                                                                                               CCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTTATGCGACGCTTGCGCGTCTTATCTGGCCTACAAATTCCCGCACACTCCATAGGCCGGCTAATGCGGTCATGCCCCATCCGGCAACCATGCCGA                                                                                                                                                                                                                                                 >  1:1234333/1‑251       GTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCT                                                                                                                                                                                                                                           <  2:282703/251‑1                 TAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCCGGCCTACAAATTCCCGCACCCTCCGTCGGCCGGATACGGCGTTTACGCCGCATCCGGCAACCGTGCCGACCGCCTGATGCC‑ACGC                                                                                                                                                                                                                                >  1:467130/1‑251                 TAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGCTGCCGACTGACTGATGGGCGGCTTGCGCGTCTTATCAGGCCTACAAATTACCGCACCCGCCGTAAGCCGGATAACTCGTTTACGCCGCATCCGGGACAGGTGCCGTCTCCCggctcggctgt                                                                                                                                                                                                                                 >  1:1363939/1‑240                            CGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGACAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTGCCTGATTCG‑ACGCccccccggctt                                                                                                                                                                                                                     >  1:449621/1‑240                            CGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCCCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTACCAGGCCTACAACTTCCCGCCCCCTTCATAGGCCGGATAAGGACGTTACGCCCCATCTGGCAACCGTACCCACAGCCTtcttccacccccacgcgcact                                                                                                                                                                                                                      >  1:947577/1‑230                                                                                                                                                    agcactgccgacgtCGACGCTGGCGCGTGTTATCAGCCCGCCAAACCCCCCCCCCCGCCGTAGGCCGAATAAGGCGTTTACGCCGCCTCCGGCAACCGTGCCAACTGCCTGATGCG‑CCGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCG                                                                                             <  1:52581/237‑1                                                                                                                                                          GCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCG‑ACGCTTGCGCGTCT                                                                                                                                                                                                                      <  2:1246684/124‑1                                                                                                                                                                  CGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCG‑ACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC                                                                                                                                                       >  2:619624/1‑179                                                                                                                                                                      GCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCG‑ACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGG                                                                                                                                                  >  2:509916/1‑180                                                                                                                                                                                  TATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCG‑ACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTAC                                                                                                                                                                   <  2:510282/151‑1                                                                                                                                                                                  TATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCG‑ACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCAC                                                                                                                                                                                              >  1:1246565/1‑124                                                                                                                                                                                            cCAAATTCCCGCACCATCCGTAGGCCGGCTAAGGGGTTTACGCCGCACCCGGCGACGGGTCCGACTGCCTGATGCG‑ACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGAACCCTCCGTAGGCCGGCTAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCG                                                     <  1:217825/250‑1                                                                                                                                                                                            ACAAATTCCCGCCCCCTCCGGTGGCCGGGTAGTGCGTTAACCCCGCACCCGGCAACGGTGCCGACTGCCTGATGCG‑CCGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCG                                                     <  1:349975/251‑1                                                                                                                                                                                                ATTCCCGGACCCCCCGTAGGGCGGATAAGGCGTTTACGCCGCAGCCGGCAACGGGGCCGACTGCCGGATGCG‑ACGCGGGCGCGTCTTACCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAA                                                 <  1:1568475/251‑1                                                                                                                                                                                                         CCCTCCGTAGGCCGGATAAGGCTTTTACGCCGCATCCGGAAACGGTGCCGACTGCCTGATGCG‑ACGCTTGCGCGTATTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGG                                                                                                           <  1:87328/184‑1                                                                                                                                                                                                            TCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCG‑ACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGC                                                          <  2:401455/230‑1                                                                                                                                                                                                               GTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCG‑ACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGCCGCTTGCGCGTCTTCTCAGACCTACAAATCCCCGCACCCTCCGCAGGCCGGATAAGGCGTTTCATCAGCACCCGGCCACCGTCCCAACcccct                                  >  1:1745613/1‑246                                                                                                                                                                                                                       GATACGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCG‑ACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAA                                                                                                                                                                            <  2:102713/105‑1                                                                                                                                                                                                                       GATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCG‑ACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCG                                                                                                                                                         <  1:967540/124‑1                                                                                                                                                                                                                         TAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCG‑ACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGC                                                                                                                                                                         >  2:14808/1‑106                                                                                                                                                                                                                                   cCGCCGCTTCCGTCAACGTGGTCGTAGGCCTGATGCG‑AGTCTGCGGCGTCTTATCATGCCTACAAATCCCCGCACCGTCGGTAGGCCGGATAAGGCGGTTACGCCTCATCCGGCAACGGGGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATGCGACGCTTGCGCGTCT              <  1:1823407/250‑1                                                                                                                                                                                                                                   acgccctgtcgtGCAACGGTGCCGTGTCCCTGA‑GCGCGCGCTTGCGCGTGATATCAGGCCTACAAATGCCCGCCCCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATGCGACGCTTGCGCGTCT              <  1:279169/239‑1                                                                                                                                                                                                                                    CGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCG‑ACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCCCACCCTCCGTAGGCCGGATAAGGCGTTTACCCCGCATCCGGCCACCGTGCCAACTGCCTctgtctcttatacacacttta             >  1:401419/1‑230                                                                                                                                                                                                                                              ggaAACGGTGCGGACAGCCGGAGGGG‑ACGCTTGCGCGTCCTATCAGGCCTACAAAATACGGGACCTTCCGTAGGCCGGATAAGGCGGTTCCGCCGGATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAGATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTA   <  1:1841177/248‑1                                                                                                                                                                                                                                               GCAACGGTGCCGACTGCCTGATGCG‑ACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGACAAGGCGTTTACGCCCCATCCGGCAACAGTGCCAACTACCGGATGCGGCGCTTTCGCGTCTTATCAGGCCaaa  >  2:1841353/1‑248                                                                                                                                                                                                                                               GCAACGGTGCCGACTGCCTGATGCG‑ACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAC                                                                                                                                                    >  1:102701/1‑105                                                                                                                                                                                                                                                    |||||||||                                                                                                                                                                                                                                               CCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4326090‑4325848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCTGATGCG‑ACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTAC  <  NC_000913/4326338‑4326102

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.