| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4325848 = | NA (NA) | 17 (0.100) +GGTGCCGAC |
6/448 | 13.5 | NA | noncoding (47/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 4326338 | NA (NA) | noncoding (537/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
AGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCA‑TCCGGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4326072‑4325848‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCC < NC_000913/4326338‑4326094 ||||||||| AGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCTGCACCCTACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTTCCGACTGCCTGATGAGACGCCTGCTCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGTCGGATACGGCGTTTACGCCGCACTACGCCAGC‑GCGCCGCCTGCCAGATGCGAgcctg > 2:614401/1‑246AGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGAGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGCTAAGGCGTTTAGGACGCA‑TCCGGCAACGGCGCCGACTGCCTGACGCGGCGCTT > 2:663373/1‑251 GCCTGATGCGACGACTGCGGGTCTTATCAGGCCTACAAATTCCCGCCCCTTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCAATGGTGCCGACGGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCC‑TCCGGCAACAGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCT < 2:184345/251‑1 gcccgacaagGGCGTTGACGCCCCTCCAGGCAGTGTAGCCACCGGCCTGAGGCGACGCTTGCGGGTCTTATCAGGCCTACAAATCCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCA‑TCCGGCAACAGTGCCAACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGAT < 2:1462939/241‑1 gaaagcgattaggcctgagCCGACAATGGTTCCGACTGCATGAGGCGACGCTTGCGAGTCTTATCAGGCATACAAATTCCCACACCCGCCGTAGGCCGGATAAGGCGTTTACGCCGCA‑ACCGGCAACAGTGCCAACTGCCAGTTGCGACGCTTGCTCTTCTTATCAAGCCTGCAAATTCCCACACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGC < 1:614266/232‑1 TAAGGCGGTTCCGCGCCCTCCGGCAAGGGGGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCGACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCA‑TCCGGCAACAGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGC < 1:663227/251‑1 ACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCATCCGTAGGCCGGATAAGGCGTTTACGCCGCA‑TCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTAAAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGGTTTCGCCGCATCCGGCACTGGCGCCGACTGCGTCATTCGACGCTTGCGCGTCT > 2:287082/1‑251 ctagTGCGACGCTTGCGCGTGTTCGCAGGCGCACGAATGCCCGCACCGTCCGTAGGCCGGATAAGGTGTTAACGCCGCC‑TCCGGCAACGGTTCCGACTGCCTGATGAGGCGCTTGCAGGTGCTATCAGGACTACAAAGTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCC < 2:529193/247‑1 CGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCTTAGGCCGGATAAGGCCTTTACGCCGCA‑TCCGGCACCGGTGCCGACTGCCTGATGCGGCGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCC < 2:374912/173‑1 GTCTGATCAGGCCTACCAATTCCCGCACCCTCCGTAGGCCGAGTAAGGCGTTTCCGTCGCA‑CCGGGCAACGGTGCCGCCTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAAGTCCCGCACCCTCCGTAGGCCGGATAAGGCGT < 1:1474393/251‑1 TCCGTAGGCCGGATAAGGCGTTTACGCCGCA‑TCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTTTTGTCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGA < 1:298636/113‑1 CCGTAGGCCGGATAAGGCGTTTACGCCGCA‑TCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGAT < 1:206526/113‑1 aagcgggttaagggcgccgCGCGGCA‑TCCGAAACCGGTCCCGAATGCCTGAGGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGAAAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGA < 1:1573813/232‑1 ATAAGGCGTTTACGCCGCA‑TCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCC > 2:674730/1‑98 CGCCGCA‑TCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTTTTGTCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGACGCATCCGGC > 2:298706/1‑113 GCCGCA‑TCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCA > 2:206597/1‑113 GCAACAGTGCCAACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATGCCACGCTTGCGCGTCTTACCAGGCCTcc > 2:1680289/1‑249 TGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCC > 2:1200736/1‑68 GCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCAACTGCCCGATGCGACGCTTGCCGCTCTTATCAGGCCTGCAAATCCCC > 2:1666726/1‑251 ||||||||| AGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCA‑TCCGGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4326072‑4325848‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCC < NC_000913/4326338‑4326094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |