New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	603377 =	285 (1.180)	6 (0.030)	5/430	18.1	2.2%	intergenic (+42/+39)	pheP/ybdG	phenylalanine transporter/mechanosensitive channel protein, miniconductance
	?	NC_000913	603410 =	262 (1.160)					intergenic (+75/+6)	pheP/ybdG	phenylalanine transporter/mechanosensitive channel protein, miniconductance
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

AAAGATATGACCTTAATGGTACGCCAACTGGCTCCAGGTGATAACGGTTTACCGCTCGAGATCTACGCGTTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/603637‑603377 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgagagcggtttTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCACCTGGAGCCAGTTGGCGTACCATTAAGGTCATATCTTTACGAATCCGCGGATGGTTACGC  >  NC_000913/603410‑603659                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAAGATATGACCTTAATGGTACGCCAACTGGCTCCAGGTGATAACGGTTTACCGCTCGAGATCTACGCGTTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCCCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATG                                                                                                                                                                                                                                                                      >  2:1978838/1‑251   AGATATGACCTTAATGGTACGCCAACTGGCTCCAGGTGATAACGGTTTACCGCTCGAGATCTACGCGTTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGCATGGATGct                                                                                                                                                                                                                                                                    >  1:55292/1‑249    GATATGACCTTAATGGTACGCCAACTGGCTCCAGGTGATAACGGTTTACCGCTCGAGATCTACGCGTTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGA                                                                                                                                                                                                                                                                   >  2:867021/1‑251          ACCTTAATGGTACGCCAACTGGCTCCAGGTGATAACGGTTTACCGCTCGAGATCTACGCGTTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTT                                                                                                                                                                                                                                                             <  1:1836797/251‑1                                        GATAACGGTTTACCGCTCGAGATCTACGCGTTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATG                                                                                                                                                                                                                                                                      >  2:1790554/1‑212                                                        TCGAGATCTACGCGTTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAACACGCTCTCATCGAATGGATGAGAGCGG                                                                                                                                                                                                                                                               >  1:774820/1‑203                                                                    CGTTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGA                                                                                                                                                                                                                                                                     <  1:1249452/185‑1                                                                      TTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCG                                                                                                                                                                                                                                                                <  2:2082491/188‑1                                                                      TTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCG                                                                                                                                                                                                                                                                <  2:1241052/188‑1                                                                        TACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTT                                                                                                                                                                                                                                                            <  2:1510128/190‑1                                                                                              GAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCG                                                                                                                                                                                                                                  <  2:1526864/194‑1                                                                                              GAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTTTTTTAATTACTGCTTAAATG                                                                                                                                                                                                                                        >  1:2082302/1‑188                                                                                              GAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTTTTTTAATTACTGCTTAAATG                                                                                                                                                                                                                                        >  1:1240967/1‑188                                                                                                ATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAG                                                                                                                                                                                                                                                                    >  2:1690547/1‑158                                                                                                 TATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAG                                                                                                                                                                                                                                                                  >  1:375174/1‑159                                                                                                     AAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCCGAGAGCGAATATAATTGCCG                                                                                                                                                                                                           >  2:756653/1‑210                                                                                                                      ATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTTTTTTAATTACTGCTTAAATTCACCCGCCAGAGAGCGAATATCATTGCCGG                                                                                                                                                                                                          >  1:1526747/1‑194                                                                                                                                                                                                                                       ACCGCTCTCATCGAATGGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACG                                                                                           >  1:642063/1‑192                                                                                                                                                                                                                                                       cgtTGAGGGCGTTTTTTTTAATTTCTGCTAAAATGCACCCGCCAGAGAGCGAATTTCATTGCCGGTTGGCGACTGTTGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCACCTGGAGCCAGTTGGCGTACCATTAAGGTCATATCTTTACGAATCC                <  1:787779/248‑1                                                                                                                                                                                                                                                        GATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCACCTGGAGCCAGTTGGCGTACCATTAAGGTCATATATTTACGAATCCG               >  1:1041460/1‑251                                                                                                                                                                                                                                                         ATGAGAGCGGTTTTTTTAATTACTGCGTAAATGCACCCCCCAGAGAGCGAATATCATTGCCGGTGGGCGACTGATGAAGTCTCAGCCCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCACCTGGAGCCAGTTGGCGTACCATTAAGGTCATATCTTTACGAATCCGC              <  1:497776/251‑1                                                                                                                                                                                                                                                                CGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCCTAGATCTCGAGCGGTAAACCGTTATCACCTGGAG                                                       >  2:774877/1‑203                                                                                                                                                                                                                                                                CGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCAAGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCACCTGGAGCCAGTTGGCGTACCATTAAGGTCATATCTTTACGAATCCGCGGATGGT       >  1:502588/1‑251                                                                                                                                                                                                                                                                  GTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCACCTGGAGCCAGTTGGCGTACCATTAAGGTCATATCTTTACGAATCCGCGGAT          <  2:1987666/246‑1                                                                                                                                                                                                                                                                  GTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCACCTGGAGCCAGTTGGCGTACCATTAAGGTCATATCTTT                        <  1:321042/232‑1                                                                                                                                                                                                                                                                   TTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCACCTGGAGCCAGTTGGCGTACCATTAAGGTCATATCTTTACGAATCCGCGGATGGTTAC    >  1:162919/1‑251                                                                                                                                                                                                                                                                   TTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGT                                                                                                >  2:375202/1‑159                                                                                                                                                                                                                                                                     TTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCACCTGGAGCCAGTTGGCGTACCATTAAGGTCATATCTTTACGAATCCGCGGATGGTTACGC  >  1:2145460/1‑251                                                                                                                                                                                                                                                                     TTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTA                                                                                               >  1:1690409/1‑158                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAAGATATGACCTTAATGGTACGCCAACTGGCTCCAGGTGATAACGGTTTACCGCTCGAGATCTACGCGTTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/603637‑603377 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgagagcggtttTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCACCTGGAGCCAGTTGGCGTACCATTAAGGTCATATCTTTACGAATCCGCGGATGGTTACGC  >  NC_000913/603410‑603659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.