New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1070548 =	249 (1.030)	5 (0.020)	5/444	18.4	2.1%	coding (408/591 nt)	rutE	putative malonic semialdehyde reductase
	?	NC_000913	1070576 =	224 (0.960)					coding (380/591 nt)	rutE	putative malonic semialdehyde reductase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

CGGCACGGATCGTGTTTACCCGCACGGCAGAAGGAAAAGAACGTCTGCGCCCGGCACTTTCCAGCGGCAATCTGCAAAAAACCCTGACCGCGCCCGTCACCGCTATCGTCGCCTGGGACAGTGAATTTTATGAACGGTTACCACTACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCTCCAGCCCACAACTTGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1070804‑1070548 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctgcATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTAGCTGATGTCG  >  NC_000913/1070576‑1070825                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CGGCACGGATCGTGTTTACCCGCACGGCAGAAGGAAAAGAACGTCTGCGCCCGGCACTTTCCAGCGGCAATCTGCAAAAAACCCTGACCGCGCCCGTCACCGCTATCGTCGCCTGGGACAGTGAATTTTATGAACGGTTACCACTACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCTCCAGCCCACAACTTGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTC                                                                                                                                                                                                                                                                  <  1:1770524/251‑1     ACGGATCGTGTTTACCCGCACGGCAGAAGGAAAAGAACGTCTGCGCCCGGCACTTTCCAGCGGCAATCTGCAAAAAACCCTGACCGCGCCCGTCACCGCTATCGTCGCCTGGGACAGTGAATTTTATGAACGGTTACCACTACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCTCCAGCCCACAACTTGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTCGCCT                                                                                                                                                                                                                                                              >  1:151794/1‑251      CGGATCGTGTTTACCCGCACGGCAGAAGGAAAAGAACGTCTGCGCCCGGCACTTTCCAGCGGCAATCTGCAAAAAACCCTGACCGCGCCCGTCACCGCTATCGTCGCCTGGGACAGTGAATTTTATGAACGGTTACCACTACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCTCCAGCCCACAACTTGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTCGCCTG                                                                                                                                                                                                                                                             >  2:357511/1‑251                     CGCACGGCAGAAGGAAAAGAACGTCAGCGCCCGGCACATTCCAGCGGCAATCTGCAAAAAACCCTGACCGCGCCCGTCACCGCTATCGTCGCCTGGAACAGTGAATTTTATGAACGGTGACCACTACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCTCCAGCCCACAACTTGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTCGCCTGCATGGAACTGTTGCG                                                                                                                                                                                                                                              <  2:176217/251‑1                                    AAAGAACGTCTGCGCCCGGCACTTTCCAGCGGCAATCTGCAAAAAACCCTGACCGCGCCCGTCACCGCTATCGTCGCCTGGGACAGTGAATTTTATGAACGGTTACCACTACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCTCCAGCCCCCAACTTGCCGAAGCAACAGCGTTTCGCAACAGTCCCATGCAGGCGGCCTATCTGATCGTCGCCTGCCTGGAATTGTTGCGAACCGCTGTTTTTTC                                                                                                                                                                                                                               >  1:176204/1‑251                                       GAACGGCTGCGCCCGGCACTTGCCCGCGGCAAGCTGCAAAAAACCCTGACCTCGCCCGTCACCGCTATCGGCGCCTGGGACAGTGAAGTTTATGAACGGTTACCACTACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCCCCAGCCCACAACTTGCCGAAGAAACCGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTCGCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGC                                                                                                                                                                                                                            <  1:2308535/251‑1                                                                     aagtcGCAAGAAACCCTCGCCGCGCCCGGCACCGCTGTCGTCGCCCGGGAAAGTGAATTTGATGAACGGTGACCACTACTGTTTCCCCACGGTGATGCCCGCAGTGGGTTTACCTCCAGCCCACAACTTGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTCGCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCG                                                                                                                                                                                              <  1:248930/246‑1                                                                        CTGCAAAAAACCCCGACCGCGCCCTGCACCGCTAGCGTCGCCTGGGACAGTGAATTTTATGAACGGTTACCACTACTGTTTCCCCACGGTTATGCCCGAAGTTGGTTTACCTCCAGCCCACAACTGGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCGGGCGGCCTATCTGATCGTCGCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGC                                                                                                                                                                                           <  1:184618/251‑1                                                                                                                                                                                                                                                       aagagacagGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGGGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTA            <  2:235324/242‑1                                                                                                                                                                                                                                                           CGCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTAGCTG        >  2:962983/1‑251                                                                                                                                                                                                                                                            GCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTAGCTGA       <  2:52103/251‑1                                                                                                                                                                                                                                                             CCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAAC                                                                                                                                                                                                      >  1:680077/1‑59                                                                                                                                                                                                                                                                GCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTA            <  2:2196971/242‑1                                                                                                                                                                                                                                                                 CATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTAGCTGATGTCG  <  1:16395/251‑1                                                                                                                                                                                                                                                                 CATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTAGCTGATGTCG  <  2:2478537/251‑1                                                                                                                                                                                                                                                                 CATGGAACTGGTGCGAAACGCGGTTTCGTCGGTCAGTTGTGGGCTGGAGTTAAGCCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGGCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTAGCTGATGTCG  <  1:2210060/251‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CGGCACGGATCGTGTTTACCCGCACGGCAGAAGGAAAAGAACGTCTGCGCCCGGCACTTTCCAGCGGCAATCTGCAAAAAACCCTGACCGCGCCCGTCACCGCTATCGTCGCCTGGGACAGTGAATTTTATGAACGGTTACCACTACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCTCCAGCCCACAACTTGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1070804‑1070548 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctgcATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTAGCTGATGTCG  >  NC_000913/1070576‑1070825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.